Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SMUG1
  • Mouse genes Smug1
  • Rat genes Smug1
  • Zfish genes smug1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Smug1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0019104	DNA N-glycosylase activity	SMUG1	IDA		Human	PMID:11526119
Molecular Function	GO:0000703	oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	Smug1	IDA		Rat	PMID:12718542|RGD:2317001
Molecular Function	GO:0005515	protein binding	SMUG1	IPI	UniProtKB:Q93062	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	SMUG1	IPI	UniProtKB:Q08AM6	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SMUG1	IPI	UniProtKB:O43186	Human	PMID:26871637
Molecular Function	GO:0005515	protein binding	SMUG1	IPI	UniProtKB:P12757	Human	PMID:26871637
Molecular Function	GO:0005515	protein binding	SMUG1	IPI	UniProtKB:Q9UJX2	Human	PMID:26871637
Molecular Function	GO:0005515	protein binding	SMUG1	IPI	UniProtKB:Q08AM6	Human	PMID:29892012
Molecular Function	GO:0017065	single-strand selective uracil DNA N-glycosylase activity	SMUG1	IDA		Human	PMID:12161446
Molecular Function	GO:0017065	single-strand selective uracil DNA N-glycosylase activity	SMUG1	IDA		Human	PMID:12718543
Molecular Function	GO:0017065	single-strand selective uracil DNA N-glycosylase activity	Smug1	IDA		Rat	PMID:12718543|RGD:634191
Molecular Function	GO:0004844	uracil DNA N-glycosylase activity	SMUG1	IDA		Human	PMID:12718543
Molecular Function	GO:0004844	uracil DNA N-glycosylase activity	Smug1	IDA		Rat	PMID:12718542|RGD:2317001
Molecular Function	GO:0004844	uracil DNA N-glycosylase activity	Smug1	IDA		Rat	PMID:12718543|RGD:634191
Cellular Component	GO:0005829	cytosol	SMUG1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0001650	fibrillar center	SMUG1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005730	nucleolus	SMUG1	IDA		Human	PMID:12161446
Cellular Component	GO:0005654	nucleoplasm	SMUG1	IDA		Human	GO_REF:0000052
Biological Process	GO:0006284	base-excision repair	SMUG1	IDA		Human	PMID:12161446
Biological Process	GO:0006284	base-excision repair	Smug1	IDA		Rat	PMID:12718543|RGD:634191
Biological Process	GO:0006281	DNA repair	Smug1	IDA		Rat	PMID:12718542|RGD:2317001

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern