Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SMU1
  • Mouse genes Smu1
  • Rat genes Smu1
  • Zfish genes smu1a,smu1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Smu1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SMU1	IPI	UniProtKB:Q96HT8	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	SMU1	IPI	UniProtKB:Q13123	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SMU1	IPI	UniProtKB:Q96HT8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SMU1	IPI	UniProtKB:Q13123	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	SMU1	IPI	UniProtKB:A6NK89	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMU1	IPI	UniProtKB:O43711	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMU1	IPI	UniProtKB:Q13123	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMU1	IPI	UniProtKB:Q4VC12	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMU1	IPI	UniProtKB:Q96HT8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMU1	IPI	UniProtKB:Q9Y5P4-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMU1	IPI	UniProtKB:Q9Y605	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMU1	IPI	UniProtKB:O76024	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMU1	IPI	UniProtKB:P49821	Human	PMID:32814053
Cellular Component	GO:0005634	nucleus	SMU1	IDA		Human	PMID:28781166
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	SMU1	IDA		Human	PMID:28781166
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SMU1	IDA		Human	PMID:28781166

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern