Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SHQ1
  • Mouse genes Shq1
  • Rat genes Shq1
  • Zfish genes shq1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Shq1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SHQ1	IPI	UniProtKB:O60832	Human	PMID:19383767
Molecular Function	GO:0005515	protein binding	SHQ1	IPI	UniProtKB:Q53SE7	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHQ1	IPI	UniProtKB:Q8NEA9	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHQ1	IPI	UniProtKB:O60832	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	SHQ1	IPI	UniProtKB:O60832	Human	PMID:29178645
Molecular Function	GO:0005515	protein binding	SHQ1	IPI	UniProtKB:Q96IK5	Human	PMID:32296183
Cellular Component	GO:0005737	cytoplasm	SHQ1	IDA		Human	PMID:19383767
Cellular Component	GO:0005829	cytosol	SHQ1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	SHQ1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	SHQ1	IDA		Human	PMID:19383767
Biological Process	GO:2000233	negative regulation of rRNA processing	SHQ1	IDA		Human	PMID:20663920
Biological Process	GO:0043065	positive regulation of apoptotic process	SHQ1	IDA		Human	PMID:20663920
Biological Process	GO:1904874	positive regulation of telomerase RNA localization to Cajal body	SHQ1	HMP		Human	PMID:25467444
Biological Process	GO:0022618	ribonucleoprotein complex assembly	SHQ1	IDA		Human	PMID:19383767

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern