Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SHFL
  • Mouse genes Shfl
  • Rat genes Shfl
  • Zfish genes shfl
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Shfl

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:P54274	Human	PMID:21044950
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:A2RRN7	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:O43597	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:P0C7H8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:P15884	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:P26371	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:P43355	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:P50222	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:P60370	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:P60409	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:P60410	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:P60411	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q13077	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q13422	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q5JR59	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q5VU43	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q63HR2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q6A162	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q6PGQ1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q6UY14-3	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q7Z3S9	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q96EV8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q96JN2-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q99750	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q9BQ66	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q9BRK4	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q9BYQ4	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q9BYR5	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q9UJV3-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q9Y2D8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q63HR2	Human	PMID:25814554
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:P11940	Human	PMID:26735137
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:Q15717|UniProtKB:Q92900|UniProtKB:Q9HCE1	Human	PMID:27974568
Molecular Function	GO:0005515	protein binding	SHFL	IPI	UniProtKB:P15170	Human	PMID:30682371
Molecular Function	GO:0043022	ribosome binding	SHFL	IDA		Human	PMID:30682371
Molecular Function	GO:0003723	RNA binding	SHFL	IDA		Human	PMID:26735137
Molecular Function	GO:0003723	RNA binding	SHFL	IDA		Human	PMID:27974568
Molecular Function	GO:1990825	sequence-specific mRNA binding	SHFL	IDA		Human	PMID:30682371
Cellular Component	GO:0005737	cytoplasm	SHFL	IDA		Human	PMID:26735137
Cellular Component	GO:0005829	cytosol	SHFL	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	SHFL	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	SHFL	IDA		Human	PMID:26735137
Cellular Component	GO:0000932	P-body	SHFL	IDA		Human	PMID:27974568
Biological Process	GO:0051607	defense response to virus	SHFL	IDA		Human	PMID:26735137
Biological Process	GO:0051607	defense response to virus	SHFL	IMP		Human	PMID:27974568
Biological Process	GO:2001125	negative regulation of translational frameshifting	SHFL	IDA		Human	PMID:30682371
Biological Process	GO:0045071	negative regulation of viral genome replication	SHFL	IMP		Human	PMID:26735137
Biological Process	GO:0006449	regulation of translational termination	SHFL	IDA		Human	PMID:30682371
Biological Process	GO:0035456	response to interferon-beta	SHFL	IDA		Human	PMID:27974568
Biological Process	GO:0034340	response to type I interferon	SHFL	IDA		Human	PMID:26735137
Biological Process	GO:0034341	response to type II interferon	SHFL	IDA		Human	PMID:26735137
Biological Process	GO:0034342	response to type III interferon	SHFL	IDA		Human	PMID:26735137
Biological Process	GO:0075523	viral translational frameshifting	SHFL	IDA		Human	PMID:30682371

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern