Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SDS
  • Mouse genes Sds
  • Rat genes Sds
  • Zfish genes sdsl
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sds

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003941	L-serine ammonia-lyase activity	SDS	IDA		Human	PMID:15689518
Molecular Function	GO:0003941	L-serine ammonia-lyase activity	SDS	IDA		Human	PMID:18342636
Molecular Function	GO:0005515	protein binding	SDS	IPI	UniProtKB:O14964	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SDS	IPI	UniProtKB:Q8WTU0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SDS	IPI	UniProtKB:Q96PF1	Human	PMID:32296183
Molecular Function	GO:0042803	protein homodimerization activity	SDS	IDA		Human	PMID:15689518
Molecular Function	GO:0030170	pyridoxal phosphate binding	SDS	IDA		Human	PMID:15689518
Cellular Component	GO:0005829	cytosol	SDS	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005739	mitochondrion	SDS	IDA		Human	GO_REF:0000052
Biological Process	GO:0006565	L-serine catabolic process	SDS	IDA		Human	PMID:15689518
Biological Process	GO:0006565	L-serine catabolic process	SDS	IDA		Human	PMID:18342636
Biological Process	GO:0065003	protein-containing complex assembly	Sds	IDA		Rat	PMID:11906824|RGD:633956
Biological Process	GO:0042866	pyruvate biosynthetic process	SDS	IDA		Human	PMID:15689518
Biological Process	GO:0043200	response to amino acid	Sds	IEP		Rat	PMID:18584286|RGD:2311255
Biological Process	GO:0033590	response to cobalamin	Sds	IEP		Rat	PMID:17761010|RGD:2311256
Biological Process	GO:0031667	response to nutrient levels	Sds	IEP		Rat	PMID:16733043|RGD:2311257

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern