Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SCAPER
  • Mouse genes Scaper
  • Rat genes Scaper
  • Zfish genes scaper
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Scaper

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SCAPER	IPI	UniProtKB:P24941	Human	PMID:17698606
Cellular Component	GO:0005737	cytoplasm	Scaper	IDA		Mouse	PMID:28794130
Cellular Component	GO:0005737	cytoplasm	Scaper	IDA		Mouse	PMID:32510560
Cellular Component	GO:0005829	cytosol	SCAPER	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	SCAPER	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	SCAPER	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Scaper	IDA		Mouse	PMID:32510560
Cellular Component	GO:1990917	ooplasm	Scaper	IDA		Mouse	PMID:32510560
Cellular Component	GO:0061827	sperm head	Scaper	IDA		Mouse	PMID:32510560
Biological Process	GO:0001547	antral ovarian follicle growth	Scaper	IMP	MGI:MGI:4455688	Mouse	PMID:32510560
Biological Process	GO:0001541	ovarian follicle development	Scaper	IMP	MGI:MGI:4455688	Mouse	PMID:32510560
Biological Process	GO:0060041	retina development in camera-type eye	SCAPER	IMP		Human	PMID:28794130
Biological Process	GO:0072520	seminiferous tubule development	Scaper	IMP	MGI:MGI:4455688	Mouse	PMID:32510560
Biological Process	GO:0007283	spermatogenesis	Scaper	IMP	MGI:MGI:4455688	Mouse	PMID:32510560

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern