Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SCAF11
  • Mouse genes Scaf11
  • Rat genes Scaf11
  • Zfish genes scaf11
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Scaf11

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SCAF11	IPI	UniProtKB:P08621	Human	PMID:9447963
Molecular Function	GO:0005515	protein binding	SCAF11	IPI	UniProtKB:P26368	Human	PMID:9447963
Molecular Function	GO:0005515	protein binding	SCAF11	IPI	UniProtKB:Q01130	Human	PMID:9447963
Molecular Function	GO:0003723	RNA binding	SCAF11	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	SCAF11	HDA		Human	PMID:22681889
Cellular Component	GO:0016604	nuclear body	SCAF11	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005730	nucleolus	SCAF11	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	SCAF11	IDA		Human	GO_REF:0000052
Biological Process	GO:0008380	RNA splicing	SCAF11	IDA		Human	PMID:9447963
Biological Process	GO:0000375	RNA splicing, via transesterification reactions	SCAF11	IDA		Human	PMID:9447963
Biological Process	GO:0000245	spliceosomal complex assembly	SCAF11	IDA		Human	PMID:9447963

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern