Comparative GO Graph (mouse, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes
  • Mouse genes Rhox5
  • Rat genes Rhox5
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rhox5

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Rhox5	IDA		Mouse	PMID:23536368
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Rhox5	IMP	MGI:MGI:2447572	Mouse	PMID:23536368
Molecular Function	GO:0005515	protein binding	Rhox5	IPI	UniProtKB:O00255	Mouse	MGI:MGI:3773771|PMID:11500056
Cellular Component	GO:0005737	cytoplasm	Rhox5	IDA		Mouse	PMID:9769172
Cellular Component	GO:0005634	nucleus	Rhox5	IDA		Mouse	MGI:MGI:5619480|PMID:17509893
Cellular Component	GO:0005634	nucleus	Rhox5	IDA		Mouse	PMID:9175728
Cellular Component	GO:0005634	nucleus	Rhox5	IDA		Mouse	PMID:25972016
Cellular Component	GO:0005634	nucleus	Rhox5	IDA		Mouse	PMID:9769172
Cellular Component	GO:0005634	nucleus	Rhox5	IDA		Mouse	PMID:7958444
Cellular Component	GO:0005634	nucleus	Rhox5	IDA		Mouse	PMID:9537288
Biological Process	GO:0035234	ectopic germ cell programmed cell death	Rhox5	IMP	MGI:MGI:2447572	Mouse	PMID:15707895
Biological Process	GO:0030317	flagellated sperm motility	Rhox5	IMP	MGI:MGI:2447572	Mouse	PMID:15707895
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Rhox5	IDA		Mouse	PMID:18077458
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Rhox5	IMP		Mouse	PMID:18077458
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Rhox5	IMP	MGI:MGI:2447572	Mouse	PMID:23536368
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Rhox5	IDA		Mouse	PMID:23536368

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern