Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RHOXF1
  • Mouse genes Rhox13
  • Rat genes Rhox13
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rhox13

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RHOXF1	IPI	UniProtKB:Q9BXW4	Human	PMID:32296183
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	RHOXF1	IDA		Human	PMID:28473536
Cellular Component	GO:0005829	cytosol	RHOXF1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	RHOXF1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	RHOXF1	IDA		Human	PMID:11980563
Cellular Component	GO:0005634	nucleus	Rhox13	IDA		Mouse	PMID:18675325
Cellular Component	GO:0005634	nucleus	Rhox13	IDA		Mouse	PMID:22190708
Biological Process	GO:0030521	androgen receptor signaling pathway	RHOXF1	IEP		Human	PMID:11980563
Biological Process	GO:0071300	cellular response to retinoic acid	Rhox13	IDA		Mouse	PMID:22190708
Biological Process	GO:0010628	positive regulation of gene expression	RHOXF1	IMP		Human	PMID:28171660

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern