Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PRDM13
  • Mouse genes Prdm13
  • Rat genes Prdm13
  • Zfish genes prdm13
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Prdm13

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Prdm13	IDA		Mouse	PMID:23639443
Molecular Function	GO:0042054	histone methyltransferase activity	Prdm13	IDA		Mouse	PMID:24370451
Molecular Function	GO:0005515	protein binding	Prdm13	IPI	PR:Q02067	Mouse	PMID:23639443
Molecular Function	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	Prdm13	IDA		Mouse	MGI:MGI:5490929|PMID:23639443
Molecular Function	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	Prdm13	IPI	UniProtKB:Q02067	Mouse	MGI:MGI:5490929|PMID:23639443
Cellular Component	GO:0005634	nucleus	Prdm13	IDA		Mouse	PMID:24370451
Biological Process	GO:0021702	cerebellar Purkinje cell differentiation	prdm13	IMP	ZFIN:ZDB-GENO-220907-1	Zfish	PMID:35390279
Biological Process	GO:0097154	GABAergic neuron differentiation	Prdm13	IMP		Mouse	MGI:MGI:6836711|PMID:34730112
Biological Process	GO:0021979	hypothalamus cell differentiation	Prdm13	IMP		Mouse	MGI:MGI:6836711|PMID:34730112
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Prdm13	IDA		Mouse	PMID:23639443
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Prdm13	IGI	MGI:MGI:96919	Mouse	PMID:23639443
Biological Process	GO:0022008	neurogenesis	Prdm13	IDA		Mouse	PMID:19050759

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern