Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PDE6C
  • Mouse genes Pde6c
  • Rat genes Pde6c
  • Zfish genes pde6c
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pde6c

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Biological Process	GO:0060059	embryonic retina morphogenesis in camera-type eye	pde6c	IMP		Zfish	PMID:23365220
Biological Process	GO:0045494	photoreceptor cell maintenance	pde6c	IMP	ZFIN:ZDB-GENO-080206-2	Zfish	PMID:20053919
Biological Process	GO:0045494	photoreceptor cell maintenance	pde6c	IMP	ZFIN:ZDB-GENO-080206-2	Zfish	PMID:18265406
Biological Process	GO:0007603	phototransduction, visible light	Pde6c	IMP	MGI:MGI:2657247	Mouse	PMID:16723493
Biological Process	GO:0046549	retinal cone cell development	Pde6c	IMP		Mouse	PMID:21052544
Biological Process	GO:0050953	sensory perception of light stimulus	Pde6c	IMP	MGI:MGI:2657247	Mouse	PMID:16723493
Biological Process	GO:0007601	visual perception	Pde6c	IMP	MGI:MGI:2657247	Mouse	PMID:22937111
Biological Process	GO:0007601	visual perception	pde6c	IMP	ZFIN:ZDB-MRPHLNO-171012-1	Zfish	PMID:28817700

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern