Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PATL1
  • Mouse genes Patl1
  • Rat genes Patl1
  • Zfish genes patl1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Patl1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0034046	poly(G) binding	PATL1	IDA		Human	PMID:20826699
Molecular Function	GO:0008266	poly(U) RNA binding	PATL1	IDA		Human	PMID:20826699
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:P26196	Human	PMID:20543818
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q6P2E9	Human	PMID:20543818
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q8IU60	Human	PMID:20543818
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:A5YKK6	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:O15116	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:P26196	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q6P2E9	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q8IU60	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q8IZH2	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q96F86	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q9NPI6	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q9UFF9	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q9UIV1	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q9ULM6	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q9Y4Z0	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:O15116	Human	PMID:20852261
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:P25788	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q08379	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q13643	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q9NPI6	Human	PMID:26496610
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:P26196	Human	PMID:31422817
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:P26196	Human	PMID:31439631
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:O15116	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:P62312	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q08379	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q13643	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q3LI66	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q86WV8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q8NI38	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q9H0C1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q9NZC7-5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PATL1	IPI	UniProtKB:Q9Y333	Human	PMID:32296183
Molecular Function	GO:0003723	RNA binding	PATL1	IDA		Human	PMID:20543818
Molecular Function	GO:0003723	RNA binding	PATL1	IDA		Human	PMID:20826699
Molecular Function	GO:0003723	RNA binding	PATL1	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	PATL1	HDA		Human	PMID:22681889
Cellular Component	GO:0036464	cytoplasmic ribonucleoprotein granule	PATL1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	PATL1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0000932	P-body	PATL1	IDA		Human	PMID:20543818
Cellular Component	GO:0000932	P-body	PATL1	IDA		Human	PMID:20584987
Cellular Component	GO:0000932	P-body	PATL1	IDA		Human	PMID:20826699
Cellular Component	GO:0000932	P-body	PATL1	IDA		Human	PMID:20852261
Biological Process	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	PATL1	IDA		Human	PMID:20584987
Biological Process	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	PATL1	IDA		Human	PMID:20852261
Biological Process	GO:0033962	P-body assembly	PATL1	IDA		Human	PMID:20584987

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern