Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes OMP
  • Mouse genes Omp
  • Rat genes Omp
  • Zfish genes ompa,ompb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Omp

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042277	peptide binding	Omp	IDA		Rat	PMID:12054873|RGD:633470
Molecular Function	GO:0005515	protein binding	Omp	IPI	RGD:1622373	Rat	PMID:12054873|RGD:633470
Molecular Function	GO:0005515	protein binding	Omp	IPI	UniProtKB:Q9R224	Rat	PMID:12911636|RGD:12793011
Molecular Function	GO:0005515	protein binding	Omp	IPI	UniProtKB:Q9WTZ8	Rat	PMID:12911636|RGD:12793011
Cellular Component	GO:0030424	axon	Omp	IDA		Mouse	PMID:16805845
Cellular Component	GO:0030424	axon	Omp	IDA		Mouse	PMID:22732430
Cellular Component	GO:0030424	axon	Omp	IDA		Mouse	PMID:16052496
Cellular Component	GO:0005737	cytoplasm	Omp	IDA		Mouse	PMID:12911636
Cellular Component	GO:0005737	cytoplasm	Omp	IDA		Rat	PMID:12911636|RGD:12793011
Cellular Component	GO:0005829	cytosol	Omp	IDA		Mouse	PMID:16805845
Cellular Component	GO:0043025	neuronal cell body	Omp	IDA		Mouse	PMID:16805845
Cellular Component	GO:0043025	neuronal cell body	Omp	IDA		Rat	PMID:3753006|RGD:12792990
Cellular Component	GO:0005634	nucleus	Omp	IDA		Mouse	PMID:12911636
Cellular Component	GO:0005634	nucleus	Omp	IDA		Rat	PMID:12911636|RGD:12793011
Biological Process	GO:0022008	neurogenesis	Omp	IDA		Mouse	PMID:18184563
Biological Process	GO:0007608	sensory perception of smell	Omp	IMP		Mouse	PMID:10094125

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern