Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NUP50
  • Mouse genes Nup50
  • Rat genes Nup50
  • Zfish genes nup50
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Nup50

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:P12270	Human	PMID:12802065
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:P06748	Human	PMID:16648475
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:O00505	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:O00629	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:O15131	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:O60684	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:P52292	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:P52294	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:Q7Z726	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:P52294	Human	PMID:26496610
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:O15131	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:P52294	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:O00505	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:O00629	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:O15131	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:O60684	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:P52292	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:P52294	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP50	IPI	UniProtKB:Q14145	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Nup50	IPI	PR:P46414	Mouse	PMID:10891500
Cellular Component	GO:0005635	nuclear envelope	NUP50	IDA		Human	PMID:24315095
Cellular Component	GO:0031965	nuclear membrane	NUP50	IDA		Human	GO_REF:0000052
Cellular Component	GO:0031965	nuclear membrane	NUP50	IDA		Human	PMID:12802065
Cellular Component	GO:0005643	nuclear pore	Nup50	IDA		Mouse	PMID:10891500
Cellular Component	GO:0005643	nuclear pore	Nup50	IDA		Rat	PMID:10891499|RGD:633381
Cellular Component	GO:0005654	nucleoplasm	NUP50	IDA		Human	GO_REF:0000052
Biological Process	GO:0001841	neural tube formation	Nup50	IMP	MGI:MGI:2385621	Mouse	PMID:10891500
Biological Process	GO:0001841	neural tube formation	Nup50	IMP	MGI:MGI:2152414	Mouse	PMID:10891500
Biological Process	GO:0001841	neural tube formation	Nup50	IMP	MGI:MGI:103561	Mouse	PMID:10891500
Biological Process	GO:0001841	neural tube formation	Nup50	IMP	MGI:MGI:107532	Mouse	PMID:10891500
Biological Process	GO:0001841	neural tube formation	Nup50	IMP	MGI:MGI:2386173	Mouse	PMID:10891500

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern