Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NGDN
  • Mouse genes Ngdn
  • Rat genes Ngdn
  • Zfish genes ngdn
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ngdn

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	NGDN	IPI	UniProtKB:Q9NY61	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NGDN	IPI	UniProtKB:Q9NY61	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	NGDN	IPI	UniProtKB:A0A142I5B9	Human	PMID:30177828
Molecular Function	GO:0005515	protein binding	NGDN	IPI	UniProtKB:P55081	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NGDN	IPI	UniProtKB:P67870	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NGDN	IPI	UniProtKB:Q5C9Z4	Human	PMID:32296183
Molecular Function	GO:0003723	RNA binding	NGDN	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	NGDN	HDA		Human	PMID:22681889
Molecular Function	GO:0045182	translation regulator activity	Ngdn	IDA		Rat	PMID:22727665|RGD:155230789
Molecular Function	GO:0045182	translation regulator activity	Ngdn	IMP		Rat	PMID:22727665|RGD:155230789
Cellular Component	GO:0098978	glutamatergic synapse	Ngdn	IDA		Rat	PMID:22727665|RGD:155230789
Cellular Component	GO:0098978	glutamatergic synapse	Ngdn	IMP		Rat	PMID:22727665|RGD:155230789
Cellular Component	GO:0005739	mitochondrion	NGDN	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005730	nucleolus	NGDN	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	NGDN	IDA		Human	GO_REF:0000052
Cellular Component	GO:0140240	perforant pathway to dendrate granule cell synapse	Ngdn	IDA		Rat	PMID:22727665|RGD:155230789
Cellular Component	GO:0140240	perforant pathway to dendrate granule cell synapse	Ngdn	IMP		Rat	PMID:22727665|RGD:155230789
Cellular Component	GO:0098794	postsynapse	Ngdn	IDA		Rat	PMID:22727665|RGD:155230789
Biological Process	GO:0099170	postsynaptic modulation of chemical synaptic transmission	Ngdn	IDA		Rat	PMID:22727665|RGD:155230789
Biological Process	GO:0099170	postsynaptic modulation of chemical synaptic transmission	Ngdn	IMP		Rat	PMID:22727665|RGD:155230789
Biological Process	GO:0140245	regulation of translation at postsynapse	Ngdn	IDA		Rat	PMID:22727665|RGD:155230789
Biological Process	GO:0140245	regulation of translation at postsynapse	Ngdn	IEP		Rat	PMID:22727665|RGD:155230789
Biological Process	GO:0140245	regulation of translation at postsynapse	Ngdn	IMP		Rat	PMID:22727665|RGD:155230789

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern