Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes LSM6
  • Mouse genes Lsm6
  • Rat genes LOC100360750,Lsm6
  • Zfish genes lsm6
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Lsm6

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:O15116	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:O95777	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:P62310	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:P62316	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:Q9UK45	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:Q9Y4Y9	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:O15116	Human	PMID:19628699
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:Q9Y333	Human	PMID:19628699
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:P54105	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:P62316	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:Q9UK45	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:Q9Y333	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:Q9Y4Y9	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:O00560	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:P54105	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:P62310	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:Q9Y4Y9	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:O15116	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:O95777	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:P54105	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:P62310	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:P62316	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:Q9UK45	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:Q9Y333	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:O00560	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:P54105	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:P62310	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:Q86TB9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:Q9Y333	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM6	IPI	UniProtKB:Q9Y4Y9	Human	PMID:32296183
Molecular Function	GO:0046982	protein heterodimerization activity	LSM6	IDA		Human	PMID:12515382
Molecular Function	GO:0003723	RNA binding	LSM6	HDA		Human	PMID:22681889
Cellular Component	GO:0005737	cytoplasm	LSM6	IDA		Human	PMID:12515382
Cellular Component	GO:0120115	Lsm2-8 complex	LSM6	IDA		Human	PMID:10523320
Cellular Component	GO:0005634	nucleus	LSM6	IDA		Human	PMID:26912367
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	LSM6	IDA		Human	PMID:28781166
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	LSM6	IPI		Human	PMID:30975767
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	LSM6	IDA		Human	PMID:26912367
Biological Process	GO:0006402	mRNA catabolic process	LSM6	IDA		Human	PMID:12515382
Biological Process	GO:0000398	mRNA splicing, via spliceosome	LSM6	IDA		Human	PMID:28781166

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern