Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes LSM1
  • Mouse genes Lsm1
  • Rat genes Lsm1
  • Zfish genes lsm1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Lsm1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003729	mRNA binding	Lsm1	IDA		Rat	PMID:19188494|RGD:9999194
Molecular Function	GO:0036002	pre-mRNA binding	Lsm1	IDA		Rat	PMID:19188494|RGD:9999194
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:O00299	Human	PMID:14667819
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:P28074	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:P62310	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:P62312	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:Q9Y333	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:Q9Y4Z0	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:Q14493	Human	PMID:18172165
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:P62310	Human	PMID:19628699
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:P62312	Human	PMID:19628699
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:Q9Y333	Human	PMID:19628699
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:Q9Y4Z0	Human	PMID:19628699
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:C9JE40	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:Q86TB9	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:Q86TB9	Human	PMID:20852261
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:P62310	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:Q9Y4Z0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:P62310	Human	PMID:26871637
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:P62312	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:A0PJW8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:O00299	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:O15217	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:O95988	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:O95994	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:P28062-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:P28074	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:P59942	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:P62310	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:Q5H9J7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:Q86TB9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:Q8TD06	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:Q9Y333	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:O00213-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	LSM1	IPI	UniProtKB:P21964-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Lsm1	IPI	UniProtKB:Q7TMF2	Mouse	MGI:MGI:5925577|PMID:23202588
Molecular Function	GO:0003723	RNA binding	LSM1	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	LSM1	HDA		Human	PMID:22681889
Cellular Component	GO:0030424	axon	Lsm1	IDA		Rat	PMID:19188494|RGD:9999194
Cellular Component	GO:0005737	cytoplasm	LSM1	IDA		Human	PMID:18559850
Cellular Component	GO:0030425	dendrite	Lsm1	IDA		Rat	PMID:19188494|RGD:9999194
Cellular Component	GO:1990124	messenger ribonucleoprotein complex	Lsm1	IDA		Rat	PMID:19188494|RGD:9999194
Cellular Component	GO:0043025	neuronal cell body	Lsm1	IDA		Rat	PMID:19188494|RGD:9999194
Cellular Component	GO:0005634	nucleus	LSM1	IDA		Human	PMID:18559850
Cellular Component	GO:0000932	P-body	Lsm1	IDA		Mouse	PMID:25456498
Biological Process	GO:0071044	histone mRNA catabolic process	LSM1	IMP		Human	PMID:18172165
Biological Process	GO:0045665	negative regulation of neuron differentiation	Lsm1	IMP		Mouse	PMID:25456498
Biological Process	GO:0030182	neuron differentiation	Lsm1	IMP		Mouse	PMID:25456498
Biological Process	GO:0019827	stem cell population maintenance	Lsm1	IMP		Mouse	PMID:25456498

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern