Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes LIN54
  • Mouse genes Lin54
  • Rat genes Lin54
  • Zfish genes lin54
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Lin54

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003680	minor groove of adenine-thymine-rich DNA binding	LIN54	IDA		Human	PMID:27465258
Molecular Function	GO:0005515	protein binding	LIN54	IPI	UniProtKB:P10244	Human	PMID:17531812
Molecular Function	GO:0005515	protein binding	LIN54	IPI	UniProtKB:Q08999	Human	PMID:17531812
Molecular Function	GO:0005515	protein binding	LIN54	IPI	UniProtKB:P10244	Human	PMID:19725879
Molecular Function	GO:0005515	protein binding	LIN54	IPI	UniProtKB:Q08999	Human	PMID:19725879
Molecular Function	GO:0005515	protein binding	LIN54	IPI	UniProtKB:P36508	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LIN54	IPI	UniProtKB:P52747	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LIN54	IPI	UniProtKB:Q02447	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LIN54	IPI	UniProtKB:Q13952-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LIN54	IPI	UniProtKB:Q15428	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LIN54	IPI	UniProtKB:Q8N9N5-2	Human	PMID:32296183
Molecular Function	GO:0001067	transcription regulatory region nucleic acid binding	LIN54	IDA		Human	PMID:27465258
Cellular Component	GO:0090571	RNA polymerase II transcription repressor complex	LIN54	IDA		Human	PMID:27465258
Biological Process	GO:0034728	nucleosome organization	LIN54	IDA		Human	PMID:27465258

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern