Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HOXC9
  • Mouse genes Hoxc9
  • Rat genes Hoxc9
  • Zfish genes hoxc9a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hoxc9

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:P03120	Human	PMID:18305892
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:O75496	Human	PMID:22615398
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:P03120	Human	PMID:22761572
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:O60711	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:O60711	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:A8MQ03	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:O60711	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:P26367	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:P35548	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:P40425	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:Q06710	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:Q08117-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:Q16633	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:Q3LI66	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:Q6NVU6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:Q8NI38	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:Q96LM6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:Q9H0C1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HOXC9	IPI	UniProtKB:Q9Y5V3	Human	PMID:32296183
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	HOXC9	IDA		Human	PMID:28473536
Cellular Component	GO:0016235	aggresome	HOXC9	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	HOXC9	IDA		Human	GO_REF:0000052
Cellular Component	GO:0017053	transcription repressor complex	HOXC9	IPI		Human	PMID:22615398
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxc9	IGI	MGI:MGI:96180	Mouse	PMID:17626057
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxc9	IGI	MGI:MGI:96190	Mouse	PMID:17626057
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxc9	IMP	MGI:MGI:2150685	Mouse	PMID:7547473
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxc9	IGI	MGI:MGI:96210	Mouse	PMID:17626057
Biological Process	GO:0048706	embryonic skeletal system development	Hoxc9	IGI	MGI:MGI:96180	Mouse	PMID:17626057
Biological Process	GO:0048706	embryonic skeletal system development	Hoxc9	IGI	MGI:MGI:96190	Mouse	PMID:17626057
Biological Process	GO:0048706	embryonic skeletal system development	Hoxc9	IGI	MGI:MGI:96210	Mouse	PMID:17626057
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxc9	IMP	MGI:MGI:2150685	Mouse	PMID:7547473
Biological Process	GO:2001213	negative regulation of vasculogenesis	hoxc9a	IGI	ZFIN:ZDB-GENE-081104-317	Zfish	PMID:21493894
Biological Process	GO:1901492	positive regulation of lymphangiogenesis	hoxc9a	IMP	ZFIN:ZDB-MRPHLNO-120222-7	Zfish	PMID:23484014

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern