Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HDGFL2
  • Mouse genes Hdgfl2
  • Rat genes Hdgfl2
  • Zfish genes hdgfl2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hdgfl2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0061628	H3K27me3 modified histone binding	HDGFL2	IDA		Human	PMID:26721387
Molecular Function	GO:0062072	H3K9me3 modified histone binding	HDGFL2	IDA		Human	PMID:26721387
Molecular Function	GO:0140566	histone reader activity	HDGFL2	IDA		Human	PMID:26721387
Molecular Function	GO:0035064	methylated histone binding	HDGFL2	IMP		Human	PMID:32459350
Molecular Function	GO:0005515	protein binding	HDGFL2	IPI	UniProtKB:Q15554	Human	PMID:21044950
Molecular Function	GO:0005515	protein binding	HDGFL2	IPI	UniProtKB:Q96ST2	Human	PMID:25689719
Molecular Function	GO:0005515	protein binding	HDGFL2	IPI	UniProtKB:P16104	Human	PMID:26721387
Molecular Function	GO:0005515	protein binding	HDGFL2	IPI	UniProtKB:P83916	Human	PMID:26721387
Molecular Function	GO:0005515	protein binding	HDGFL2	IPI	UniProtKB:Q7Z3K3	Human	PMID:26721387
Molecular Function	GO:0005515	protein binding	HDGFL2	IPI	UniProtKB:Q99708	Human	PMID:26721387
Molecular Function	GO:0005515	protein binding	HDGFL2	IPI	UniProtKB:P51532	Human	PMID:32459350
Molecular Function	GO:0005515	protein binding	HDGFL2	IPI	UniProtKB:Q92784-2	Human	PMID:32459350
Molecular Function	GO:0005515	protein binding	HDGFL2	IPI	UniProtKB:Q92922	Human	PMID:32459350
Molecular Function	GO:0005515	protein binding	Hdgfl2	IPI	UniProtKB:P58269-2|UniProtKB:Q3TKT4	Mouse	MGI:MGI:6442596|PMID:32459350
Molecular Function	GO:0005515	protein binding	Hdgfl2	IPI	PR:P51859	Mouse	PMID:22212508
Cellular Component	GO:0005737	cytoplasm	Hdgfl2	IDA		Rat	PMID:26252862|RGD:11527165
Cellular Component	GO:0005634	nucleus	HDGFL2	IDA		Human	PMID:26721387
Cellular Component	GO:0005634	nucleus	Hdgfl2	IDA		Mouse	PMID:22212508
Cellular Component	GO:0005634	nucleus	Hdgfl2	IDA		Rat	PMID:26252862|RGD:11527165
Biological Process	GO:0140861	DNA repair-dependent chromatin remodeling	HDGFL2	IMP		Human	PMID:26721387
Biological Process	GO:0042692	muscle cell differentiation	HDGFL2	IMP		Human	PMID:32459350
Biological Process	GO:0042692	muscle cell differentiation	Hdgfl2	IMP		Mouse	MGI:MGI:6442596|PMID:32459350
Biological Process	GO:0030307	positive regulation of cell growth	HDGFL2	IMP		Human	PMID:25689719
Biological Process	GO:1905168	positive regulation of double-strand break repair via homologous recombination	HDGFL2	IMP		Human	PMID:26721387
Biological Process	GO:0043403	skeletal muscle tissue regeneration	Hdgfl2	IMP		Mouse	MGI:MGI:6442596|PMID:32459350

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern