Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes COL6A4P1,COL6A4P2
  • Mouse genes Col6a4
  • Rat genes Col6a4
  • Zfish genes col6a4a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Col6a4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005518	collagen binding	Col6a4	IPI	UniProtKB:P12109	Mouse	PMID:18400749
Molecular Function	GO:0005518	collagen binding	Col6a4	IPI	UniProtKB:P12110	Mouse	PMID:18400749
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col6a4	HDA		Mouse	MGI:MGI:6201834|PMID:22159717
Cellular Component	GO:0031012	extracellular matrix	Col6a4	IDA		Mouse	PMID:26571399
Cellular Component	GO:0005576	extracellular region	Col6a4	IDA		Mouse	PMID:18400749
Cellular Component	GO:0032991	protein-containing complex	Col6a4	IDA		Mouse	PMID:18400749
Biological Process	GO:0007409	axonogenesis	col6a4a	IMP	ZFIN:ZDB-MRPHLNO-160127-5	Zfish	PMID:26362255
Biological Process	GO:0030198	extracellular matrix organization	Col6a4	IDA		Mouse	PMID:26571399
Biological Process	GO:0007517	muscle organ development	col6a4a	IMP	ZFIN:ZDB-MRPHLNO-160127-5	Zfish	PMID:26362255

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern