Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes COL17A1
  • Mouse genes Col17a1
  • Rat genes Col17a1
  • Zfish genes col17a1a,col17a1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Col17a1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0030020	extracellular matrix structural constituent conferring tensile strength	COL17A1	HDA		Human	PMID:28344315
Molecular Function	GO:0005515	protein binding	COL17A1	IPI	UniProtKB:P15924	Human	PMID:12482924
Molecular Function	GO:0005515	protein binding	COL17A1	IPI	UniProtKB:P16144	Human	PMID:12482924
Molecular Function	GO:0005515	protein binding	COL17A1	IPI	UniProtKB:Q03001	Human	PMID:12482924
Molecular Function	GO:0005515	protein binding	COL17A1	IPI	UniProtKB:Q03001-3	Human	PMID:12482924
Molecular Function	GO:0005515	protein binding	COL17A1	IPI	UniProtKB:Q15149	Human	PMID:12482924
Molecular Function	GO:0005515	protein binding	COL17A1	IPI	UniProtKB:O60568	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COL17A1	IPI	UniProtKB:Q96T60	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COL17A1	IPI	UniProtKB:Q9H0L4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COL17A1	IPI	UniProtKB:Q9P202	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COL17A1	IPI	UniProtKB:Q9UHD9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COL17A1	IPI	UniProtKB:Q9Y3C6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Col17a1	IPI	UniProtKB:P08246	Mouse	MGI:MGI:5320878|PMID:21979170
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL17A1	HDA		Human	PMID:28344315
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL17A1	HDA		Human	PMID:25037231
Cellular Component	GO:0030056	hemidesmosome	COL17A1	IDA		Human	PMID:12482924
Cellular Component	GO:0030056	hemidesmosome	Col17a1	IDA		Mouse	PMID:8707838
Biological Process	GO:0008544	epidermis development	col17a1a	IMP	ZFIN:ZDB-MRPHLNO-101021-1	Zfish	PMID:20670682
Biological Process	GO:0031581	hemidesmosome assembly	COL17A1	IDA		Human	PMID:12482924
Biological Process	GO:0048925	lateral line system development	col17a1b	IMP	ZFIN:ZDB-MRPHLNO-101021-2	Zfish	PMID:20670682

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern