Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes COCH
  • Mouse genes Coch
  • Rat genes Coch
  • Zfish genes coch
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Coch

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005518	collagen binding	COCH	IDA		Human	PMID:22610276
Molecular Function	GO:0005515	protein binding	COCH	IPI	UniProtKB:P07355	Human	PMID:21886777
Molecular Function	GO:0005515	protein binding	Coch	IPI	PR:Q8BNJ2	Mouse	PMID:23684986
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COCH	IDA		Human	PMID:22610276
Cellular Component	GO:0031012	extracellular matrix	Coch	IDA		Mouse	PMID:11709536
Biological Process	GO:0008360	regulation of cell shape	COCH	IMP		Human	PMID:21886777
Biological Process	GO:0007605	sensory perception of sound	Coch	IMP	MGI:MGI:3624560	Mouse	PMID:21073934

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern