Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CLP1
  • Mouse genes Clp1
  • Rat genes Clp1
  • Zfish genes clp1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Clp1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0051733	polydeoxyribonucleotide kinase activity	CLP1	IDA		Human	PMID:17495927
Molecular Function	GO:0051736	polyribonucleotide 5'-hydroxyl-kinase activity	CLP1	IDA		Human	PMID:17495927
Molecular Function	GO:0051736	polyribonucleotide 5'-hydroxyl-kinase activity	CLP1	IMP		Human	PMID:24766809
Molecular Function	GO:0051736	polyribonucleotide 5'-hydroxyl-kinase activity	CLP1	IMP		Human	PMID:24766810
Molecular Function	GO:0051736	polyribonucleotide 5'-hydroxyl-kinase activity	clp1	IMP		Zfish	PMID:24766810|ZFIN:ZDB-PUB-140513-86
Molecular Function	GO:0005515	protein binding	CLP1	IPI	UniProtKB:O43320	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CLP1	IPI	UniProtKB:P13994	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CLP1	IPI	UniProtKB:P22061-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CLP1	IPI	UniProtKB:P28074	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CLP1	IPI	UniProtKB:P79522	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CLP1	IPI	UniProtKB:Q14696	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CLP1	IPI	UniProtKB:Q6FHY5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CLP1	IPI	UniProtKB:Q7Z6J9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CLP1	IPI	UniProtKB:Q8NCG7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CLP1	IPI	UniProtKB:Q96H20	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CLP1	IPI	UniProtKB:Q9C0B1-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CLP1	IPI	UniProtKB:Q9UPV0	Human	PMID:32296183
Cellular Component	GO:0005829	cytosol	CLP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	CLP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	CLP1	IDA		Human	PMID:24766810
Cellular Component	GO:0000214	tRNA-intron endonuclease complex	CLP1	IDA		Human	PMID:17495927
Biological Process	GO:0007420	brain development	clp1	IMP	ZFIN:ZDB-GENO-140725-6	Zfish	PMID:24766810
Biological Process	GO:0021695	cerebellar cortex development	CLP1	IMP		Human	PMID:24766809
Biological Process	GO:0021695	cerebellar cortex development	CLP1	IMP		Human	PMID:24766810
Biological Process	GO:0021695	cerebellar cortex development	Clp1	IMP		Mouse	MGI:MGI:5568133|PMID:24766809
Biological Process	GO:0098795	global gene silencing by mRNA cleavage	CLP1	IMP		Human	PMID:17495927
Biological Process	GO:0070922	RISC complex assembly	CLP1	IDA		Human	PMID:17495927
Biological Process	GO:0021522	spinal cord motor neuron differentiation	clp1	IMP	ZFIN:ZDB-GENO-140725-6	Zfish	PMID:24766810
Biological Process	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	CLP1	IDA		Human	PMID:17495927
Biological Process	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	CLP1	IMP		Human	PMID:24766809
Biological Process	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	CLP1	IMP		Human	PMID:24766810

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern