Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CHADL
  • Mouse genes Chadl
  • Rat genes Chadl
  • Zfish genes chadla,chadlb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Chadl

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005518	collagen binding	CHADL	IDA		Human	PMID:25451920
Molecular Function	GO:0098633	collagen fibril binding	CHADL	IDA		Human	PMID:25451920
Cellular Component	GO:0062023	collagen-containing extracellular matrix	CHADL	IDA		Human	PMID:25451920
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Chadl	IDA		Mouse	MGI:MGI:5617405|PMID:25451920
Biological Process	GO:0032331	negative regulation of chondrocyte differentiation	Chadl	IMP		Mouse	MGI:MGI:5617405|PMID:25451920
Biological Process	GO:1904027	negative regulation of collagen fibril organization	CHADL	IDA		Human	PMID:25451920

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern