Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes ATMIN
  • Mouse genes Atmin
  • Rat genes Atmin,Atmin-ps2
  • Zfish genes atmin
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Atmin

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Atmin	IDA		Mouse	MGI:MGI:5431042|PMID:22167198
Molecular Function	GO:0070840	dynein complex binding	ATMIN	IPI	UniProtKB:P63167	Human	PMID:22167198
Molecular Function	GO:0005515	protein binding	ATMIN	IPI	UniProtKB:Q13315	Human	PMID:17525732
Molecular Function	GO:0000976	transcription cis-regulatory region binding	Atmin	IDA		Mouse	MGI:MGI:5431042|PMID:22167198
Cellular Component	GO:0016604	nuclear body	ATMIN	IDA		Human	GO_REF:0000052
Biological Process	GO:0044458	motile cilium assembly	Atmin	IMP	MGI:MGI:3640783	Mouse	PMID:25294941
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	ATMIN	IDA		Human	PMID:22167198
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Atmin	IMP		Mouse	MGI:MGI:5431042|PMID:22167198
Biological Process	GO:0010628	positive regulation of gene expression	Atmin	IDA		Mouse	PMID:25294941
Biological Process	GO:1902857	positive regulation of non-motile cilium assembly	Atmin	IMP	MGI:MGI:2682328	Mouse	PMID:25294941
Biological Process	GO:1902857	positive regulation of non-motile cilium assembly	Atmin	IGI	MGI:MGI:1861457	Mouse	PMID:25294941
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Atmin	IDA		Mouse	MGI:MGI:5431042|PMID:22167198

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern