Gene Expression Literature Summary
|
Symbol Name ID |
Pax3
paired box 3 MGI:97487 |
| Age | E1.5 | E2 | E7.5 | E8 | E8.5 | E9 | E9.5 | E10 | E10.5 | E11 | E11.5 | E12 | E12.5 | E13 | E13.5 | E14 | E14.5 | E15 | E15.5 | E16 | E16.5 | E17 | E17.5 | E18 | E18.5 | E19.5 | E20 | E | P |
| Immunohistochemistry (section) | 1 | 5 | 5 | 7 | 38 | 10 | 82 | 12 | 51 | 3 | 30 | 17 | 8 | 3 | 8 | 1 | 4 | 1 | 3 | 5 | 1 | 1 | 6 | 8 | |||||
| In situ RNA (section) | 1 | 1 | 6 | 4 | 43 | 13 | 44 | 9 | 38 | 2 | 26 | 2 | 12 | 7 | 1 | 7 | 1 | 2 | 2 | 6 | 5 | ||||||||
| Immunohistochemistry (whole mount) | 2 | 1 | 1 | 2 | 1 | 2 | |||||||||||||||||||||||
| In situ RNA (whole mount) | 1 | 1 | 15 | 10 | 65 | 10 | 72 | 9 | 35 | 3 | 6 | 1 | 2 | 2 | 2 | 8 | 2 | ||||||||||||
| In situ reporter (knock in) | 3 | 4 | 10 | 4 | 20 | 3 | 20 | 2 | 6 | 1 | 1 | 1 | 1 | 1 | 3 | ||||||||||||||
| Northern blot | 3 | 3 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |||||||||||||||||
| Western blot | 1 | 3 | 1 | 6 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 2 | |||||||||||||||||
| RT-PCR | 1 | 1 | 6 | 1 | 10 | 3 | 16 | 4 | 17 | 1 | 10 | 7 | 1 | 7 | 2 | 3 | 2 | 2 | 1 | 5 | 1 | 1 | 9 | ||||||
| cDNA clones | 1 | 1 | 3 | 1 | 1 | 1 | 1 | 1 | 1 | ||||||||||||||||||||
| RNase protection | 1 | 1 | 1 |
| Pax3 paired box 3 (Synonyms: Pax-3, Splchl2) | |
| Results | Reference |
| 1* | J:320934 Alankarage D, Szot JO, Pachter N, Slavotinek A, Selleri L, Shieh JT, Winlaw D, Giannoulatou E, Chapman G, Dunwoodie SL, Functional characterization of a novel PBX1 de novo missense variant identified in a patient with syndromic congenital heart disease. Hum Mol Genet. 2020 May 8;29(7):1068-1082 |
| 2 | J:163855 Alder O, Lavial F, Helness A, Brookes E, Pinho S, Chandrashekran A, Arnaud P, Pombo A, O'Neill L, Azuara V, Ring1B and Suv39h1 delineate distinct chromatin states at bivalent genes during early mouse lineage commitment. Development. 2010 Aug 1;137(15):2483-92 |
| 1* | J:78010 Amieux PS, Howe DG, Knickerbocker H, Lee DC, Su T, Laszlo GS, Idzerda RL, McKnight GS, Increased basal cAMP-dependent protein kinase activity inhibits the formation of mesoderm-derived structures in the developing mouse embryo. J Biol Chem. 2002 Jul 26;277(30):27294-304 |
| 2 | J:330443 Anania C, Acemel RD, Jedamzick J, Bolondi A, Cova G, Brieske N, Kuhn R, Wittler L, Real FM, Lupianez DG, In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation. Nat Genet. 2022 Jul;54(7):1026-1036 |
| 2 | J:204445 Andersen DC, Laborda J, Baladron V, Kassem M, Sheikh SP, Jensen CH, Dual role of delta-like 1 homolog (DLK1) in skeletal muscle development and adult muscle regeneration. Development. 2013 Sep;140(18):3743-53 |
| 1 | J:153597 Anderson C, Thorsteinsdottir S, Borycki AG, Sonic hedgehog-dependent synthesis of laminin alpha1 controls basement membrane assembly in the myotome. Development. 2009 Oct;136(20):3495-504 |
| 7 | J:187740 Anderson C, Williams VC, Moyon B, Daubas P, Tajbakhsh S, Buckingham ME, Shiroishi T, Hughes SM, Borycki AG, Sonic hedgehog acts cell-autonomously on muscle precursor cells to generate limb muscle diversity. Genes Dev. 2012 Sep 15;26(18):2103-17 |
| 2* | J:106154 Anderson DM, Arredondo J, Hahn K, Valente G, Martin JF, Wilson-Rawls J, Rawls A, Mohawk is a novel homeobox gene expressed in the developing mouse embryo. Dev Dyn. 2006 Mar;235(3):792-801 |
| 1 | J:232560 Anderson MJ, Schimmang T, Lewandoski M, An FGF3-BMP Signaling Axis Regulates Caudal Neural Tube Closure, Neural Crest Specification and Anterior-Posterior Axis Extension. PLoS Genet. 2016 May;12(5):e1006018 |
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| 3* | J:134595 Anthony TE, Heintz N, The folate metabolic enzyme ALDH1L1 is restricted to the midline of the early CNS, suggesting a role in human neural tube defects. J Comp Neurol. 2007 Jan 10;500(2):368-83 |
| 1 | J:222437 Aoto K, Sandell LL, Butler Tjaden NE, Yuen KC, Watt KE, Black BL, Durnin M, Trainor PA, Mef2c-F10N enhancer driven beta-galactosidase (LacZ) and Cre recombinase mice facilitate analyses of gene function and lineage fate in neural crest cells. Dev Biol. 2015 Jun 1;402(1):3-16 |
| 1* | J:38384 Arkell R, Beddington RS, BMP-7 influences pattern and growth of the developing hindbrain of mouse embryos. Development. 1997 Jan;124(1):1-12 |
| 1 | J:327968 Arostegui M, Wilder Scott R, Bose K, Michael Underhill T, Cellular taxonomy of Hic1(+) mesenchymal progenitor derivatives in the limb: from embryo to adult. Nat Commun. 2022 Aug 25;13(1):4989 |
| 3* | J:51099 Asakura A, Tapscott SJ, Apoptosis of epaxial myotome in Danforth's short-tail (Sd) mice in somites that form following notochord degeneration. Dev Biol. 1998 Nov 15;203(2):276-89 |
| 2 | J:336501 Asfour H, Hirsinger E, Rouco R, Zarrouki F, Hayashi S, Swist S, Braun T, Patel K, Relaix F, Andrey G, Stricker S, Duprez D, Stantzou A, Amthor H, Inhibitory SMAD6 interferes with BMP-dependent generation of muscle progenitor cells and perturbs proximodistal pattern of murine limb muscles. Development. 2023 Jun 1;150(11):dev201504 |
| 2* | J:181888 Ashe A, Butterfield NC, Town L, Courtney AD, Cooper AN, Ferguson C, Barry R, Olsson F, Liem KF Jr, Parton RG, Wainwright BJ, Anderson KV, Whitelaw E, Wicking C, Mutations in mouse Ift144 model the craniofacial, limb and rib defects in skeletal ciliopathies. Hum Mol Genet. 2012 Apr 15;21(8):1808-23 |
| 1 | J:84975 Bach A, Lallemand Y, Nicola MA, Ramos C, Mathis L, Maufras M, Robert B, Msx1 is required for dorsal diencephalon patterning. Development. 2003 Sep;130(17):4025-36 |
| 2 | J:83662 Bachiller D, Klingensmith J, Shneyder N, Tran U, Anderson R, Rossant J, De Robertis EM, The role of chordin/Bmp signals in mammalian pharyngeal development and DiGeorge syndrome. Development. 2003 Aug;130(15):3567-78 |
| 1 | J:274580 Bademci G, Abad C, Incesulu A, Elian F, Reyahi A, Diaz-Horta O, Cengiz FB, Sineni CJ, Seyhan S, Atli EI, Basmak H, Demir S, Nik AM, Footz T, Guo S, Duman D, Fitoz S, Gurkan H, Blanton SH, Walter MA, Carlsson P, Walz K, Tekin M, FOXF2 is required for cochlear development in humans and mice. Hum Mol Genet. 2019 Apr 15;28(8):1286-1297 |
| 1 | J:112701 Bailey PJ, Klos JM, Andersson E, Karlen M, Kallstrom M, Ponjavic J, Muhr J, Lenhard B, Sandelin A, Ericson J, A global genomic transcriptional code associated with CNS-expressed genes. Exp Cell Res. 2006 Oct 1;312(16):3108-19 |
| 1* | J:93087 Bajanca F, Luz M, Duxson MJ, Thorsteinsdottir S, Integrins in the mouse myotome: developmental changes and differences between the epaxial and hypaxial lineage. Dev Dyn. 2004 Oct;231(2):402-15 |
| 2* | J:81313 Bajanca F, Thorsteinsdottir S, Integrin expression patterns during early limb muscle development in the mouse. Mech Dev. 2002 Dec;119 Suppl 1:S131-4 |
| 5 | J:112275 Bajard L, Relaix F, Lagha M, Rocancourt D, Daubas P, Buckingham ME, A novel genetic hierarchy functions during hypaxial myogenesis: Pax3 directly activates Myf5 in muscle progenitor cells in the limb. Genes Dev. 2006 Sep 1;20(17):2450-64 |
| 1* | J:57893 Barber TD, Barber MC, Cloutier TE, Friedman TB, PAX3 gene structure, alternative splicing and evolution. Gene. 1999 Sep 17;237(2):311-9 |
| 1* | J:74736 Barbera JP, Rodriguez TA, Greene ND, Weninger WJ, Simeone A, Copp AJ, Beddington RS, Dunwoodie S, Folic acid prevents exencephaly in Cited2 deficient mice. Hum Mol Genet. 2002 Feb 1;11(3):283-93 |
| 1* | J:245730 Bardot P, Vincent SD, Fournier M, Hubaud A, Joint M, Tora L, Pourquie O, The TAF10-containing TFIID and SAGA transcriptional complexes are dispensable for early somitogenesis in the mouse embryo. Development. 2017 Oct 15;144(20):3808-3818 |
| 2 | J:216520 Beck-Cormier S, Escande M, Souilhol C, Vandormael-Pournin S, Sourice S, Pilet P, Babinet C, Cohen-Tannoudji M, Notchless is required for axial skeleton formation in mice. PLoS One. 2014;9(5):e98507 |
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| 1* | J:304565 Bi-Lin KW, Seshachalam PV, Tuoc T, Stoykova A, Ghosh S, Singh MK, Critical role of the BAF chromatin remodeling complex during murine neural crest development. PLoS Genet. 2021 Mar;17(3):e1009446 |
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| 8 | J:103320 Blake JA, Ziman MR, Pax3 transcripts in melanoblast development. Dev Growth Differ. 2005 Dec;47(9):627-35 |
| 9* | J:17224 Bober E, Franz T, Arnold HH, Gruss P, Tremblay P, Pax-3 is required for the development of limb muscles: a possible role for the migration of dermomyotomal muscle progenitor cells. Development. 1994 Mar;120(3):603-12 |
| 1 | J:52317 Borello U, Coletta M, Tajbakhsh S, Leyns L, De Robertis EM, Buckingham M, Cossu G, Transplacental delivery of the Wnt antagonist Frzb1 inhibits development of caudal paraxial mesoderm and skeletal myogenesis in mouse embryos. Development. 1999 Oct;126(19):4247-55 |
| 2* | J:55780 Borycki AG, Brunk B, Tajbakhsh S, Buckingham M, Chiang C, Emerson CP Jr, Sonic hedgehog controls epaxial muscle determination through Myf5 activation. Development. 1999 Sep;126(18):4053-63 |
| 3* | J:55248 Borycki AG, Li J, Jin F, Emerson CP, Epstein JA, Pax3 functions in cell survival and in pax7 regulation. Development. 1999 Apr;126(8):1665-74 |
| 1* | J:275243 Bosch PJ, Fuller LC, Weiner JA, A critical role for the nuclear protein Akirin2 in the formation of mammalian muscle in vivo. Genesis. 2019 May;57(5):e23286 |
| 1 | J:165285 Bouvier J, Thoby-Brisson M, Renier N, Dubreuil V, Ericson J, Champagnat J, Pierani A, Chedotal A, Fortin G, Hindbrain interneurons and axon guidance signaling critical for breathing. Nat Neurosci. 2010 Sep;13(9):1066-74 |
| 2* | J:21616 Braun T, Bober E, Rudnicki MA, Jaenisch R, Arnold HH, MyoD expression marks the onset of skeletal myogenesis in Myf-5 mutant mice. Development. 1994 Nov;120(11):3083-92 |
| 4 | J:188916 Brohl D, Vasyutina E, Czajkowski MT, Griger J, Rassek C, Rahn HP, Purfurst B, Wende H, Birchmeier C, Colonization of the satellite cell niche by skeletal muscle progenitor cells depends on Notch signals. Dev Cell. 2012 Sep 11;23(3):469-81 |
| 1* | J:56466 Brohmann H, Jagla K, Birchmeier C, The role of Lbx1 in migration of muscle precursor cells. Development. 2000 Jan;127(2):437-45 |
| 8 | J:97318 Brown CB, Engleka KA, Wenning J, Min Lu M, Epstein JA, Identification of a hypaxial somite enhancer element regulating Pax3 expression in migrating myoblasts and characterization of hypaxial muscle Cre transgenic mice. Genesis. 2005 Apr;41(4):202-9 |
| 1* | J:299457 Brown HM, Murray SA, Northrup H, Au KS, Niswander LA, Snx3 is important for mammalian neural tube closure via its role in canonical and non-canonical WNT signaling. Development. 2020 Nov 19;147(22):dev192518 |
| 3 | J:116769 Buckingham M, Bajard L, Daubas P, Esner M, Lagha M, Relaix F, Rocancourt D, Myogenic progenitor cells in the mouse embryo are marked by the expression of Pax3/7 genes that regulate their survival and myogenic potential. Anat Embryol (Berl). 2006 Dec;211 Suppl 7:51-6 |
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| 1 | J:218594 Butler SJ, Bronner ME, From classical to current: Analyzing peripheral nervous system and spinal cord lineage and fate. Dev Biol. 2015 Feb 15;398(2):135-146 |
| 2 | J:87223 Buttitta L, Mo R, Hui CC, Fan CM, Interplays of Gli2 and Gli3 and their requirement in mediating Shh-dependent sclerotome induction. Development. 2003 Dec;130(25):6233-43 |
| 1 | J:82463 Cachaco AS, Chuva de Sousa Lopes SM, Kuikman I, Bajanca F, Abe K, Baudoin C, Sonnenberg A, Mummery CL, Thorsteinsdottir S, Knock-in of integrin beta 1D affects primary but not secondary myogenesis in mice. Development. 2003 Apr;130(8):1659-71 |
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| 1 | J:312438 Cameron B, Lehrmann E, Chih T, Walters J, Buksch R, Snyder S, Goffena J, Lefcort F, Becker KG, George L, Loss of Elp1 perturbs histone H2A.Z and the Notch signaling pathway. Biol Open. 2021 Sep 15;10(9):bio058979 |
| 1* | J:272561 Cantu C, Felker A, Zimmerli D, Prummel KD, Cabello EM, Chiavacci E, Mendez-Acevedo KM, Kirchgeorg L, Burger S, Ripoll J, Valenta T, Hausmann G, Vilain N, Aguet M, Burger A, Panakova D, Basler K, Mosimann C, Mutations in Bcl9 and Pygo genes cause congenital heart defects by tissue-specific perturbation of Wnt/beta-catenin signaling. Genes Dev. 2018 Nov 1;32(21-22):1443-1458 |
| 1* | J:325107 Cao X, Yan Y, Luo X, Yang X, Cui H, Yang Y, Li H, Analyses of the circadian clock genes expression in whole embryos and maternal major tissues of mice. J Mol Histol. 2022 Apr;53(2):473-482 |
| 1 | J:196361 Cappellari O, Benedetti S, Innocenzi A, Tedesco FS, Moreno-Fortuny A, Ugarte G, Lampugnani MG, Messina G, Cossu G, Dll4 and PDGF-BB convert committed skeletal myoblasts to pericytes without erasing their myogenic memory. Dev Cell. 2013 Mar 25;24(6):586-99 |
| 1* | J:153128 Castets P, Maugenre S, Gartioux C, Rederstorff M, Krol A, Lescure A, Tajbakhsh S, Allamand V, Guicheney P, Selenoprotein N is dynamically expressed during mouse development and detected early in muscle precursors. BMC Dev Biol. 2009;9:46 |
| 1* | J:142648 Castranio T, Mishina Y, Bmp2 is required for cephalic neural tube closure in the mouse. Dev Dyn. 2008 Dec 18;238(1):110-122 |
| 3* | J:259848 Chal J, Al Tanoury Z, Oginuma M, Moncuquet P, Gobert B, Miyanari A, Tassy O, Guevara G, Hubaud A, Bera A, Sumara O, Garnier JM, Kennedy L, Knockaert M, Gayraud-Morel B, Tajbakhsh S, Pourquie O, Recapitulating early development of mouse musculoskeletal precursors of the paraxial mesoderm in vitro. Development. 2018 Mar 19;145(6):dev157339 |
| 2* | J:223069 Chal J, Oginuma M, Al Tanoury Z, Gobert B, Sumara O, Hick A, Bousson F, Zidouni Y, Mursch C, Moncuquet P, Tassy O, Vincent S, Miyanari A, Bera A, Garnier JM, Guevara G, Hestin M, Kennedy L, Hayashi S, Drayton B, Cherrier T, Gayraud-Morel B, Gussoni E, Relaix F, Tajbakhsh S, Pourquie O, Differentiation of pluripotent stem cells to muscle fiber to model Duchenne muscular dystrophy. Nat Biotechnol. 2015 Sep;33(9):962-9 |
| 5* | J:141111 Chang CP, Stankunas K, Shang C, Kao SC, Twu KY, Cleary ML, Pbx1 functions in distinct regulatory networks to pattern the great arteries and cardiac outflow tract. Development. 2008 Nov;135(21):3577-86 |
| 1 | J:222441 Chang R, Petersen JR, Niswander LA, Liu A, A hypomorphic allele reveals an important role of inturned in mouse skeletal development. Dev Dyn. 2015 Jun;244(6):736-47 |
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| 1 | J:224508 Chatterjee M, Guo Q, Weber S, Scholpp S, Li JY, Pax6 regulates the formation of the habenular nuclei by controlling the temporospatial expression of Shh in the diencephalon in vertebrates. BMC Biol. 2014;12:13 |
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| 1 | J:183920 Chen J, Lai F, Niswander L, The ubiquitin ligase mLin41 temporally promotes neural progenitor cell maintenance through FGF signaling. Genes Dev. 2012 Apr 15;26(8):803-15 |
| 1 | J:190166 Chen JA, Wichterle H, Apoptosis of limb innervating motor neurons and erosion of motor pool identity upon lineage specific dicer inactivation. Front Neurosci. 2012;6:69 |
| 1 | J:147282 Chen L, Guo Q, Li JY, Transcription factor Gbx2 acts cell-nonautonomously to regulate the formation of lineage-restriction boundaries of the thalamus. Development. 2009 Apr;136(8):1317-26 |
| 1 | J:333926 Chen Y, Wu C, Peng S, Guo D, Ouyang H, Wei Y, Ju R, Ding X, Xie Z, Liu C, Single-Cell Characterization of the Frizzled 5 (Fz5) Mutant Mouse and Human Persistent Fetal Vasculature (PFV). Invest Ophthalmol Vis Sci. 2023 Mar 1;64(3):8 |
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| 1 | J:236378 Choi HM, Calvert CR, Husain N, Huss D, Barsi JC, Deverman BE, Hunter RC, Kato M, Lee SM, Abelin AC, Rosenthal AZ, Akbari OS, Li Y, Hay BA, Sternberg PW, Patterson PH, Davidson EH, Mazmanian SK, Prober DA, van de Rijn M, Leadbetter JR, Newman DK, Readhead C, Bronner ME, Wold B, Lansford R, Sauka-Spengler T, Fraser SE, Pierce NA, Mapping a multiplexed zoo of mRNA expression. Development. 2016 Oct 1;143(19):3632-3637 |
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| 3* | J:143023 Coumailleau P, Duprez D, Sim1 and Sim2 expression during chick and mouse limb development. Int J Dev Biol. 2009;53(1):149-57 |
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| 1 | J:174203 Crippa S, Cassano M, Messina G, Galli D, Galvez BG, Curk T, Altomare C, Ronzoni F, Toelen J, Gijsbers R, Debyser Z, Janssens S, Zupan B, Zaza A, Cossu G, Sampaolesi M, miR669a and miR669q prevent skeletal muscle differentiation in postnatal cardiac progenitors. J Cell Biol. 2011 Jun 27;193(7):1197-212 |
| 1* | J:151956 Crist CG, Montarras D, Pallafacchina G, Rocancourt D, Cumano A, Conway SJ, Buckingham M, Muscle stem cell behavior is modified by microRNA-27 regulation of Pax3 expression. Proc Natl Acad Sci U S A. 2009 Aug 11;106(32):13383-7 |
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