Foxq1 RNA in situ Gene Expression Assay

Gene Expression Data
Assay Details

Assay

Reference:	J:364229 Cantu Gutierrez ME, et al., Mapping the transcriptional and epigenetic landscape of organotypic endothelial diversity in the developing and adult mouse. Nat Cardiovasc Res. 2025 Mar 17;
Assay type:	RNA in situ
MGI Accession ID:	MGI:8172360
Gene symbol:	Foxq1
Gene name:	forkhead box Q1

Probe:	Foxq1 probe
Visualized with:	Fluorescence
Assay notes:	single-molecule fluorescent in situ hybridization (smFISH)

Results

Specimen 7i E12.5 (left) Foxq1: embryonic day 12.5 (more

)
Note: Double labeled: magenta - Foxq1; white - Acta2 (assay MGI:8172364).

Structure	Level	Pattern	Image	Note
TS20: brain blood vessel	Present		7i Foxq1 SMA E12.5 inset , 7i Foxq1 SMA E12.5

Specimen 7i P7 (left) Foxq1: postnatal day 7 (more

)
Note: Double labeled: magenta - Foxq1; white - Acta2 (assay MGI:8172364).

Structure	Level	Pattern	Image	Note
TS28: brain blood vessel	Present		7i Foxq1 SMA P7 inset , 7i Foxq1 SMA P7

Specimen 7i Adult (left) Foxq1: postnatal adult (more

)
Note: Double labeled: magenta - Foxq1; white - Acta2 (assay MGI:8172364).

Structure	Level	Pattern	Image	Note
TS28: brain blood vessel	Present		7i Foxq1 SMA Adult inset , 7i Foxq1 SMA Adult

Specimen 7i E12.5 (right) Foxq1: embryonic day 12.5 (more

)
Note: Double labeled: magenta - Foxq1; yellow - Cldn5 (assay MGI:8172362).

Structure	Level	Pattern	Image	Note
TS20: brain vascular element	Present	Regionally restricted	7i Foxq1 CLDN5 E12.5 , 7i Foxq1 CLDN5 E12.5 inset	Expression enriched in developing brain endothelium.

Specimen 7i P7 (right) Foxq1: postnatal day 7 (more

)
Note: Double labeled: magenta - Foxq1; yellow - Cldn5 (assay MGI:8172362).

Structure	Level	Pattern	Image	Note
TS28: brain vascular element	Present	Regionally restricted	7i Foxq1 CLDN5 P7 , 7i Foxq1 CLDN5 P7 inset	Expression enriched in developing brain endothelium.

Specimen 7i Adult (right) Foxq1: postnatal adult (more

)
Note: Double labeled: magenta - Foxq1; yellow - Cldn5 (assay MGI:8172362).

Structure	Level	Pattern	Image	Note
TS28: brain vascular element	Present	Regionally restricted	7i Foxq1 CLDN5 Adult inset , 7i Foxq1 CLDN5 Adult	Expression enriched in developing brain endothelium.

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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