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Gene Expression Data
Assay Details
Assay
Reference: J:61583 Failli V, et al., Lhx9 and Lhx9alpha LIM-homeodomain factors: genomic structure, expression patterns, chromosomal localization, and phylogenetic analysis. Genomics. 2000 Mar 15;64(3):307-17
Assay type: RNA in situ
MGI Accession ID: MGI:7859764
Gene symbol: Lhx9
Gene name: LIM homeobox protein 9
Probe: Lhx9alpha probe
Probe preparation: Antisense RNA
Visualized with: Autoradiography
Assay notes: This probe detected a homeodomain-truncated isform.
Results
Specimen 4A2: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: diencephalon Weak 4A2 Expressed at a significantly lower level.
TS20: neocortex Absent 4A2
TS20: allocortex Weak 4A2 Expressed in the archicortex, anlage of the future hippocampus, at a significantly lower level.

Specimen 4B2: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: allocortex Present 4B2 Expressed in the archicortex, anlage of the future hippocampus, at a significantly lower level.
TS21: neocortex Absent 4B2
TS21: thalamus Present Regionally restricted 4B2 Expressed in the dorsal thalamus, at a significantly lower level.

Specimen 4C2: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: thalamus Present Regionally restricted 4C2 Expressed in the p2 prosomeres (corresponding to the dorsal thalamus/epithalamus).
TS21: hypothalamus Present Regionally restricted 4C2 Expressed in the p4 prosomeres (corresponding to the supraoptic paraventricular area/eminentia thalami/caudal ganglionic eminence).
TS21: caudal ganglionic eminence Present 4C2

Specimen 4E2: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: allocortex Present Regionally restricted 4E2 Expressed in the archicortex, anlage of the future hippocampus, at a significantly lower level.

Specimen 4F2: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: neocortex Absent 4F2

Specimen 4G: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: heart Present 4G

Specimen not shown: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: gonad Present
TS21: limb Present
TS21: spinal cord Present

Specimen not shown: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: telencephalon Absent The onset of expression of this homeodomain-truncated isform was around E12.5.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory