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Gene Expression Data
Assay Details
Assay
Reference: J:171615 Georgas KM, et al., Expression of metanephric nephron-patterning genes in differentiating mesonephric tubules. Dev Dyn. 2011 Jun;240(6):1600-12
Assay type: RNA in situ
MGI Accession ID: MGI:7857124
Gene symbol: Col9a1
Gene name: collagen, type IX, alpha 1
Probe: RIKEN clone 1110031E13 subclone 1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen S2 & Table S2 10.5 dpc: embryonic day 10.5 (more )
Note: GUDMAP:9962
Structure Level Pattern Image Note
TS17: cranial mesonephric tubule Absent S2_mesonephros Col9a1 , S2_UGT Col9a1
TS17: caudal mesonephric tubule Present S2_UGT Col9a1 , S2_mesonephros Col9a1
TS17: metanephric mesenchyme Present S2_UGT Col9a1
TS17: nephric duct, mesonephric portion Ambiguous
Specimen Table S2 12.5-13.5 dpc kidney: embryonic day 13.5 (more )
Note: GUDMAP:9966
Structure Level Pattern Image Note
TS21: renal interstitium Present
TS21: early nephron Absent Early tubule (-)
Specimen Table S2 12.5-13.5 dpc female: embryonic day 13.5 (more )
Note: GUDMAP:9965
Structure Level Pattern Image Note
TS21: mesonephric tubule of female Absent
TS21: mesonephric mesenchyme of female Present
Specimen Table S2 12.5-13.5 dpc male: embryonic day 13.5 (more )
Note: GUDMAP:9963
Structure Level Pattern Image Note
TS21: mesonephric tubule of male Absent
TS21: mesonephric mesenchyme of male Present
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
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