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Gene Expression Data
Assay Details
Assay
Reference: J:308968 Sigulinsky CL, et al., Expression of Sonic Hedgehog and pathway components in the embryonic mouse head: anatomical relationships between regulators of positive and negative feedback. BMC Res Notes. 2021 Aug 5;14(1):300
Assay type: RNA in situ
MGI Accession ID: MGI:7664633
Gene symbol: Gli1
Gene name: GLI-Kruppel family member GLI1
Probe: Gli1 probe
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 1C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: head Present Regionally restricted 1C
TS23: eyelid Strong 1C Robust expression across all tissues examined.
TS23: hair follicle Strong 1C Robust expression across all tissues examined.
TS23: molar Strong 1C Robust expression across all tissues examined.
TS23: palatal rugae Strong 1C Robust expression across all tissues examined.
TS23: retina Strong 1C Robust expression across all tissues examined.

Specimen 2O: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw molar Present Widespread 2O Expression throughout epithelial and mesenchymal structures., mirroring that of Ptch1.
TS23: upper jaw molar mesenchyme Strong Regionally restricted 2O Stronger expression in mesenchymal tissues.
TS23: dental sac Strong 2O Strongest expression in dental follicle.
TS23: oral region mesenchyme Present Regionally restricted 2O No expression in oral mesenchyme.

Specimen 2P: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: lower jaw molar Present Widespread 2P Expression throughout epithelial and mesenchymal structures., mirroring that of Ptch1.
TS23: lower jaw molar mesenchyme Strong Regionally restricted 2P Stronger expression in mesenchymal tissues.
TS23: dental sac Strong 2P Strongest expression in dental follicle.
TS23: oral region mesenchyme Present Regionally restricted 2P No expression in oral mesenchyme.

Specimen 2Q: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hair follicle Present Widespread 2Q Expression throughout epithelial and mesenchymal structures, largely restricted within border of Hhip expression.
TS23: hair follicle dermal papilla Strong 2Q Stronger expression in mesenchymal tissues.

Specimen 2R: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: palatal shelf epithelium Present 2R Expression throughout epithelial and mesenchymal structures.
TS23: palatal shelf mesenchyme Present 2R Expression throughout epithelial and mesenchymal structures.
TS23: palatal rugae epithelium Present 2R Expression in rugae of palatal oral epithelium.
TS23: palatal rugae mesenchyme Present Regionally restricted 2R Expression in adjacent mesenchyme in pattern simlar to that of Ptch1 but more restricted in range and less uniform within mesenchymal component.

Specimen 2S: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: eyelid Present Regionally restricted 2S Expression in both eyelid epithelium and adjacent mesenchyme.
TS23: eyelid epithelium Strong Regionally restricted 2S Stronger expression in basal layer eyelid epithelium.
TS23: eyelid mesenchyme Present Regionally restricted 2S Expression in adjacent mesenchyme of eye tip.

Specimen 2T: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Present Regionally restricted 2T Expression definitively restricted to neuroblast layer.
TS23: eye anterior segment Present Regionally restricted 2T Expression in stroma of iris.

Specimen 2U: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: retina nuclear layer Present 2U Expression overlapping with that of Ptch1 in neuroblast layer of neural retina
TS23: retina ganglion cell layer Absent 2U No expression in differentiated cell layer.
TS23: perioptic mesenchyme Present Regionally restricted 2U Narrow band of expression in scleral condensation of extraocular mesenchyme, marking boundary with retina pigmented epithelium.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory