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Gene Expression Data
Assay Details
Assay
Reference: J:320376 Kleijer KTE, et al., Structural abnormalities in the primary somatosensory cortex and a normal behavioral profile in Contactin-5 deficient mice. Cell Adh Migr. 2018 Jan 2;12(1):5-18
Assay type: RNA in situ
MGI Accession ID: MGI:7611721
Gene symbol: Cntn5
Gene name: contactin 5
Probe: Cntn5 probe
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 2B: postnatal day 7 (more )
Note: Post-fixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS28: CA1 pyramidal cell layer Present 2B
TS28: dentate gyrus granule cell layer Present 2B
TS28: dentate gyrus molecular layer Present 2B
TS28: hippocampus molecular layer Present 2B

Specimen 2F: postnatal day 7 (more )
Note: Post-fixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS28: cortical layer IV Present 2F
TS28: barrel cortex Present 2F Expression of the mRNA localizes to the barrels.

Specimen 2H: postnatal day 7 (more )
Note: Post-fixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS28: mammillary body Strong 2H

Specimen 3D: postnatal adult (more )
Note: Post-fixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS28: cortical layer IV Present 3D
TS28: primary somatosensory cortex Present 3D

Specimen 3D': postnatal adult (more )
Note: Post-fixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS28: cortical layer IV Present 3D'
TS28: primary somatosensory cortex Present 3D'

Specimen Table 1: postnatal day 7 (more )
Note: Post-fixed in 4% paraformaldehyde. + coded as 'present'; ++ coded as 'strong'; +/- coded as 'weak'.
Structure Level Pattern Image Note
TS28: accessory olfactory bulb granule cell layer Present
TS28: accessory olfactory bulb mitral cell layer Present
TS28: anterior olfactory nucleus Present
TS28: cortical layer IV Present
TS28: entorhinal cortex Present
TS28: main olfactory bulb glomerular layer Present
TS28: main olfactory bulb granule cell layer Present
TS28: main olfactory bulb mitral cell layer Present
TS28: cortical layer V Weak
TS28: piriform cortex Strong
TS28: hippocampal formation Present Regionally restricted Expression was present in parasubiculum, postsubiculum, and presubiculum.
TS28: CA1 pyramidal cell layer Present
TS28: dentate gyrus granule cell layer Present
TS28: subiculum Present
TS28: accumbens nucleus Present
TS28: amygdala Present
TS28: caudate-putamen Present
TS28: lateral dorsal thalamic nucleus Strong
TS28: anterior dorsal thalamic nucleus Present
TS28: anterior ventral thalamic nucleus Present
TS28: lateral geniculate nucleus Present
TS28: lateral habenular nucleus Present
TS28: lateral posterior thalamic nucleus Present
TS28: medial dorsal thalamic nucleus Present
TS28: medial geniculate nucleus Present
TS28: posterior thalamic group Present
TS28: thalamus Weak Entry in table Thalamus: Other +/-.
TS28: inferior colliculus Strong
TS28: superior olivary nucleus Strong
TS28: premammillary nucleus Present
TS28: ventromedial hypothalamic nucleus Present
TS28: zona incerta Present
TS28: lateral mammillary nucleus Strong
TS28: medial mammillary nucleus Strong
TS28: supramammillary nucleus Strong
TS28: hypothalamus Weak Diffuse Entry in table Hypothalamus: Diffuse +/-.
TS28: cerebellum Purkinje cell layer Present
TS28: ventral nucleus of lateral lemniscus Present


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/21/2024
MGI 6.23
The Jackson Laboratory