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Gene Expression Data
Assay Details
Assay
Reference: J:68840 Nakagawa Y, et al., Combinatorial expression patterns of LIM-homeodomain and other regulatory genes parcellate developing thalamus. J Neurosci. 2001 Apr 15;21(8):2711-25
Assay type: RNA in situ
MGI Accession ID: MGI:7524723
Gene symbol: Lhx1
Gene name: LIM homeobox protein 1
Probe: Lhx1 cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 2I: postnatal day 2 (more )
Structure Level Pattern Image Note
TS27: ventral lateral geniculate nucleus Present 2I
TS27: zona incerta Present Regionally restricted 2I Expression in rostral subdivision of zona incerta.

Specimen 2J: postnatal day 2 (more )
Structure Level Pattern Image Note
TS27: ventral lateral geniculate nucleus Present Non-Uniform 2J Expression in ventral lateral geniculate nucleus is not uniform.
TS27: zona incerta Present Regionally restricted 2J Expression in rostral subdivision of zona incerta.

Specimen 2K: postnatal day 2 (more )
Structure Level Pattern Image Note
TS27: ventral lateral geniculate nucleus Present Regionally restricted 2K Relatively low expression in middle and dorsal parts.
TS27: zona incerta Present Regionally restricted 2K Expression in rostral subdivision of zona incerta.

Specimen 2L: postnatal day 2 (more )
Structure Level Pattern Image Note
TS27: ventral lateral geniculate nucleus Present Regionally restricted 2L Relatively low expression in middle and dorsal parts.
TS27: zona incerta Present Regionally restricted 2L Expression in dorsal and ventral subdivisions of zona incerta.

Specimen 5E: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: ventral lateral geniculate nucleus Strong Regionally restricted 5E Expression in ventral lateral geniculate nucleus is high in ventromedial and ventrolateral parts.
TS24: zona incerta Present Regionally restricted 5E Expression in rostral, dorsal and ventral subdivisions of zona incerta
TS24: zona limitans intrathalamica Present 5E

Specimen 5F: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: ventral lateral geniculate nucleus Strong Regionally restricted 5F Expression in ventral lateral geniculate nucleus is high in ventromedial and ventrolateral parts.
TS24: zona limitans intrathalamica Present 5F

Specimen 5G: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: ventral lateral geniculate nucleus Strong Regionally restricted 5G Expression in ventral lateral geniculate nucleus is high in ventromedial and ventrolateral parts. Expression in ventral lateral geniculate nucleus is high ventrally.

Specimen 5H: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: zona incerta Present Regionally restricted 5H Expression in rostral, dorsal and ventral subdivisions of zona incerta.
TS24: zona limitans intrathalamica Present Regionally restricted 5H Expressed in two bands of zona limitans intrathalamica.

Specimen 6A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: ventral lateral geniculate nucleus Present 6A

Specimen 6B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: ventral lateral geniculate nucleus Strong Regionally restricted 6B Expression in ventral lateral geniculate nucleus is high ventrally.
TS22: zona limitans intrathalamica Present Regionally restricted 6B Expressed in two bands of zona limitans intrathalamica.

Specimen 6C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: zona limitans intrathalamica Present 6C

Specimen 6D: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: zona limitans intrathalamica Present 6D

Specimen 7A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: thalamus Present Regionally restricted 7A' , 7A Domain of expression surrounding thalamocortical axon bundle.

Specimen 7B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: thalamus Present Regionally restricted 7B , 7B' At more caudal level, thalamocortical axon bundle does not express Lhx1. Domain expressing Lhx1, Isl1 and Pax6 but not Lhx5. Expression in putative ventral lateral geniculate nucleus.
TS20: zona limitans intrathalamica Present 7B , 7B'

Specimen 7C: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: thalamus Present Regionally restricted 7C At most caudal level, domain of expression in ventral lateral geniculate nucleus.
TS20: zona limitans intrathalamica Present 7C

Specimen 8F: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: diencephalon Present Regionally restricted 8F Expression in ventral thalamus.
TS17: diencephalon mantle layer Present Regionally restricted 8F


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/14/2024
MGI 6.23
The Jackson Laboratory