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Gene Expression Data
Assay Details
Assay
Reference: J:186285 Lefkovics K, et al., Comparative analysis of type II classic cadherin mRNA distribution patterns in the developing and adult mouse somatosensory cortex and hippocampus suggests significant functional redundancy. J Comp Neurol. 2012 May 1;520(7):1387-1405
Assay type: RNA in situ
MGI Accession ID: MGI:7492299
Gene symbol: Cdh19
Gene name: cadherin 19, type 2
Probe: Cdh19 cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Using another probe (MGI:6169479) based on the Allen Brain Atlas probe information showed identical expression pattern.
Results
Specimen 3L: postnatal adult (more )
Structure Level Pattern Image Note
TS28: somatosensory cortex Present 3L
Specimen 5G: embryonic day 14.0 (more )
Structure Cell Type Level Pattern Image Note
TS22: hippocampus GABAergic interneuron Present Regionally restricted 5G Expressed in the ventricular zone. Summarized in Table 3.
Specimen 5H: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: hippocampus ventricular layer Present 5H Summarized in Table 3.
TS24: hippocampus Present Regionally restricted 5H Expressed in the hippocampal plate (the future pyramidal cell layer). High expression in the marginal zone. Very low expression in the intermediate zone.
TS24: dentate gyrus Weak Regionally restricted 5H Weak expression in the ventricular zone.
Specimen 5I: postnatal day 1 (more )
Structure Cell Type Level Pattern Image Note
TS27: dentate gyrus granule cell layer Present 5I Summarized in Table 3.
TS27: dentate gyrus hilus Present 5I Summarized in Table 3.
TS27: dentate gyrus molecular layer Present 5I Summarized in Table 3.
TS27: hippocampus molecular layer Present 5I Summarized in Table 3.
TS27: hippocampus stratum lacunosum Present 5I Summarized in Table 3.
TS27: hippocampus stratum lucidum Present 5I Summarized in Table 3.
TS27: hippocampus stratum oriens Present 5I Summarized in Table 3.
TS27: hippocampus stratum radiatum Present 5I Summarized in Table 3.
TS27: hippocampus CA3 hippocampal pyramidal neuron Strong 5I
TS27: CA1 pyramidal cell layer Weak 5I
Specimen 7C1: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum oriens Present Single cells 7C1 Expressed only in a few cells.
TS28: CA1 pyramidal cell layer Strong 7C1
TS28: hippocampus stratum radiatum Present 7C1
Specimen 7C2: postnatal adult (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum oriens Present Single cells 7C2 Expressed only in a few cells.
TS28: CA1 pyramidal cell layer Strong 7C2
TS28: hippocampus stratum radiatum Present 7C2
Specimen 7C3: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: CA3 pyramidal cell layer Strong 7C3
TS28: hippocampus stratum lucidum Present 7C3
Specimen 7C4: postnatal adult (more )
Structure Level Pattern Image Note
TS28: CA3 pyramidal cell layer Strong 7C4
TS28: hippocampus stratum lucidum Present 7C4
Specimen 7C5: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus granule cell layer Weak 7C5
TS28: dentate gyrus hilus Present 7C5
Specimen 7C6: postnatal adult (more )
Structure Level Pattern Image Note
TS28: dentate gyrus granule cell layer Weak 7C6
TS28: dentate gyrus hilus Present 7C6
Specimen 8I: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum radiatum Present 8I
Specimen 10C1: embryonic day 14.0 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS22: cerebral cortex marginal layer Present 10C1
TS22: cerebral cortex subventricular zone Present 10C1
TS22: cerebral cortex ventricular layer Present 10C1
TS22: cerebral cortex intermediate zone Absent 10C1
TS22: cortical plate Absent 10C1
TS22: cortical subplate Absent 10C1
Specimen 10C2: embryonic day 16.0 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS24: cerebral cortex intermediate zone Present 10C2
TS24: cerebral cortex marginal layer Present 10C2
TS24: cerebral cortex subventricular zone Present 10C2
TS24: cerebral cortex ventricular layer Present 10C2
TS24: cortical plate Present 10C2
TS24: cortical subplate Absent 10C2
Specimen 10C3: embryonic day 18.0 (more )
Structure Level Pattern Image Note
TS26: cerebral cortex ventricular layer Present 10C3
Specimen 10C4: postnatal day 1 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS27: cerebral cortex intermediate zone Absent 10C4
TS27: cortical layer I Present 10C4
TS27: cortical layer II Present 10C4
TS27: cortical layer III Present 10C4
TS27: cortical layer IV Present 10C4
TS27: cortical layer V Present 10C4
TS27: cortical layer VI Present 10C4
TS27: cortical subplate Present 10C4
Specimen 10C5: postnatal day 10 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS28: cortical layer I Present 10C5
TS28: cortical layer II Present 10C5
TS28: cortical layer III Present 10C5
TS28: cortical layer IV Present 10C5
TS28: cortical layer V Present 10C5
TS28: cortical layer VI Present 10C5
TS28: cortical subplate Present 10C5
TS28: cerebral hemisphere white matter Absent 10C5
Specimen 10C6: postnatal adult (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS28: cortical layer I Present 10C6 fairly low levels
TS28: cortical layer II Present 10C6 fairly low levels
TS28: cortical layer III Present 10C6 fairly low levels
TS28: cortical layer IV Present 10C6 fairly low levels
TS28: cortical layer V Present 10C6 fairly low levels
TS28: cortical layer VI Present 10C6 fairly low levels
TS28: cortical subplate Present 10C6 fairly low levels
TS28: cerebral hemisphere white matter Absent 10C6
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory