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Gene Expression Data
Assay Details
Assay
Reference: J:186285 Lefkovics K, et al., Comparative analysis of type II classic cadherin mRNA distribution patterns in the developing and adult mouse somatosensory cortex and hippocampus suggests significant functional redundancy. J Comp Neurol. 2012 May 1;520(7):1387-1405
Assay type: RNA in situ
MGI Accession ID: MGI:7492295
Gene symbol: Cdh6
Gene name: cadherin 6
Probe: Cad6 cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 4A: embryonic day 14.0 (more )
Structure Level Pattern Image Note
TS22: hippocampus Present Regionally restricted 4A Expressed in the preplate. Summarized in Table 3.
Specimen 4B: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: hippocampus Present Regionally restricted 4B Expressed in the hippocampal plate (the future pyramidal cell layer). High expression in the marginal zone.
Specimen 4C: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: subiculum Very strong 4C
TS27: dentate gyrus Absent 4C
TS27: hippocampus pyramidal cell layer Absent 4C
TS27: hippocampus molecular layer Present 4C Summarized in Table 3.
TS27: hippocampus stratum lacunosum Present 4C Summarized in Table 3.
Specimen 6A1: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum oriens Present Single cells 6A1 Expressed only in a few cells.
TS28: CA1 pyramidal cell layer Strong 6A1
TS28: hippocampus stratum radiatum Present 6A1
Specimen 6A2: postnatal adult (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum oriens Present Single cells 6A2 Expressed only in a few cells.
TS28: CA1 pyramidal cell layer Strong 6A2
TS28: hippocampus stratum radiatum Absent 6A2
Specimen 6A3: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: CA3 pyramidal cell layer Present 6A3
TS28: hippocampus stratum lucidum Present 6A3
Specimen 6A4: postnatal adult (more )
Structure Level Pattern Image Note
TS28: CA3 pyramidal cell layer Strong 6A4
TS28: hippocampus stratum lucidum Present 6A4
Specimen 6A5: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus granule cell layer Trace 6A5 Barely detectable.
TS28: dentate gyrus hilus Present 6A5
Specimen 6A6: postnatal adult (more )
Structure Level Pattern Image Note
TS28: dentate gyrus granule cell layer Trace 6A6 Barely detectable.
TS28: dentate gyrus hilus Present 6A6
Specimen 8A: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum radiatum Present 8A
Specimen 9A1: embryonic day 14.0 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS22: cerebral cortex marginal layer Present 9A1
TS22: cerebral cortex ventricular layer Present 9A1
TS22: cortical plate Present 9A1
TS22: cerebral cortex intermediate zone Absent 9A1
TS22: cerebral cortex subventricular zone Absent 9A1
TS22: cortical subplate Absent 9A1
Specimen 9A2: embryonic day 16.0 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS24: cerebral cortex ventricular layer Present 9A2
TS24: cortical plate Present 9A2
TS24: cerebral cortex intermediate zone Absent 9A2
TS24: cerebral cortex marginal layer Absent 9A2
TS24: cerebral cortex subventricular zone Absent 9A2
TS24: cortical subplate Absent 9A2
Specimen 9A3: embryonic day 18.0 (more )
Structure Level Pattern Image Note
TS26: cerebral cortex ventricular layer Present 9A3
TS26: cerebral cortex marginal zone Absent 9A3
Specimen 9A4: postnatal day 1 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS27: cerebral cortex intermediate zone Absent 9A4
TS27: cortical layer I Absent 9A4
TS27: cortical layer II Present 9A4
TS27: cortical layer III Present 9A4
TS27: cortical layer IV Present 9A4
TS27: cortical layer V Present 9A4
TS27: cortical layer VI Present 9A4
TS27: cortical subplate Present 9A4
Specimen 9A5: postnatal day 10 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS28: cerebral hemisphere white matter Absent 9A5
TS28: cortical layer I Absent 9A5
TS28: cortical layer VI Absent 9A5
TS28: cortical layer II Present 9A5
TS28: cortical layer III Present 9A5
TS28: cortical layer IV Present 9A5
TS28: cortical layer V Present 9A5
TS28: cortical subplate Present 9A5
Specimen 9A6: postnatal adult (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS28: cerebral hemisphere white matter Absent 9A6
TS28: cortical layer I Absent 9A6
TS28: cortical layer II Present 9A6
TS28: cortical layer III Present 9A6
TS28: cortical layer IV Present 9A6
TS28: cortical layer V Present 9A6
TS28: cortical layer VI Present 9A6
TS28: cortical subplate Present 9A6
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory