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Gene Expression Data
Assay Details
Assay
Reference: J:252976 Shin JO, et al., Temporal and spatial expression patterns of Hedgehog receptors in the developing inner and middle ear. Int J Dev Biol. 2017;61(8-9):557-563
Assay type: RNA in situ
MGI Accession ID: MGI:7437504
Gene symbol: Ptch1
Gene name: patched 1
Probe: Ptch1 probe
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 1B: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: neural tube Present Graded 1B Expression was in a graded pattern, more strongly on the ventral side and becoming gradually weaker toward the dorsal side.
TS15: otocyst Present Graded 1B Expression was in a graded pattern, more strongly on the ventral side and becoming gradually weaker toward the dorsal side.

Specimen 1G: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: neural tube Present Graded 1G Expression was in a graded pattern, more strongly on the ventral side and becoming gradually weaker toward the dorsal side.
TS17: otocyst Present Graded 1G Expression was in a graded pattern, more strongly on the ventral side and becoming gradually weaker toward the dorsal side.

Specimen 2C: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS20: inner ear Present Graded 2C Expression was in graded pattern, more weakly in the dorsal vestibular organs and becoming gradually stronger toward the ventral cochlea.
TS20: cochlea Present Graded 2C
TS20: inner ear vestibular component Present Graded 2C

Specimen 2I: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS20: inner ear Present Graded 2I Expression was in graded pattern, more weakly in the dorsal vestibular organs and becoming gradually stronger toward the ventral cochlea.
TS20: cochlea Present Graded 2I
TS20: inner ear vestibular component Present Graded 2I

Specimen 2O: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS20: inner ear Present Graded 2O Expression was in graded pattern, more weakly in the dorsal vestibular organs and becoming gradually stronger toward the ventral cochlea.
TS20: cochlea Present Graded 2O
TS20: inner ear vestibular component Present Graded 2O

Specimen 2U: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS20: inner ear Present Graded 2U Expression was in graded pattern, more weakly in the dorsal vestibular organs and becoming gradually stronger toward the ventral cochlea.
TS20: cochlea Present Graded 2U
TS20: inner ear vestibular component Present Graded 2U
TS20: vestibulo-cochlear ganglion Present 2U

Specimen 3D: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS20: vestibulo-cochlear ganglion Present Regionally restricted 3D Expression was upregulated only at the cochlear level of the cochleovestibular ganglion.

Specimen 3I: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS20: vestibulo-cochlear ganglion Present Regionally restricted 3I Expression was upregulated only at the cochlear level of the cochleovestibular ganglion.

Specimen 4C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: inner ear vestibular component Absent 4C

Specimen 4D: embryonic day 15.5 (more )
Structure Cell Type Level Pattern Image Note
TS23: cochlea epithelium Present Graded 4D' , 4D Expression was stronger in the apex and weaker toward the base.
TS23: inner ear mesenchyme Present Graded 4D' , 4D Expression was stronger in the apex and weaker toward the base.
TS23: cochlear ganglion spiral ganglion neuron Present 4D , 4D'

Specimen 5C: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: inner ear Absent 5C' , 5C'' , 5C

Specimen 5D: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: inner ear Absent 5D' , 5D'' , 5D

Specimen 6C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: middle ear Present Regionally restricted 6C Expression was detected in middle ear joints and annular ligaments.
TS23: stapes Present Regionally restricted 6C Expression was detected in the stapedial footplate.

Specimen 6I: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: middle ear Present Regionally restricted 6I Expression was detected in middle ear joints.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/30/2025
MGI 6.24
The Jackson Laboratory