Gene Expression Data
Assay Details
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Assay
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Reference:
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J:207523
Edlund RK, et al., Foxi transcription factors promote pharyngeal arch development by regulating formation of FGF signaling centers. Dev Biol. 2014 Jun 1;390(1):1-13
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:7428440
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Gene symbol:
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Pax9
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Gene name:
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paired box 9
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Probe:
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Pax9 probe27
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Probe preparation:
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Antisense labelled with digoxigenin RNA
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Results
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Specimen
4B WT 15ss left:
embryonic day 9.0
(more  )
Note: 15 somites
Specimen
4B WT 15ss left:
(close  )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 9.0
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Age Note:
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Age assigned by curator based on morphological criteria supplied by authors.
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Sex:
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Not Specified
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Type:
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whole mount
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Note:
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15 somites
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Specimen
4B WT 15ss right:
embryonic day 9.0
(more )
Note: 15 somites
Specimen
4B WT 15ss right:
(close )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 9.0
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Age Note:
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Age assigned by curator based on morphological criteria supplied by authors.
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Sex:
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Not Specified
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Type:
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section from whole mount
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Embedding:
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Gelatin
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Note:
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15 somites
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Specimen
4B -/- 15ss left:
(close )
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Genetic Background:
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involves: 129X1/SvJ * BALB/c
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Mutant Allele(s):
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Foxi3tm1.2Akg/Foxi3tm1.2Akg
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Age:
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embryonic day 9.0
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Age Note:
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Age assigned by curator based on morphological criteria supplied by authors.
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Sex:
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Not Specified
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Type:
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whole mount
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Note:
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15 somites
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Specimen
4B -/- 15ss right:
(close )
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Genetic Background:
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involves: 129X1/SvJ * BALB/c
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Mutant Allele(s):
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Foxi3tm1.2Akg/Foxi3tm1.2Akg
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Age:
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embryonic day 9.0
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Age Note:
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Age assigned by curator based on morphological criteria supplied by authors.
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Sex:
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Not Specified
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Type:
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section from whole mount
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Embedding:
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Gelatin
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Note:
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15 somites
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Specimen
4B WT 25ss left:
embryonic day 9.5
(more )
Note: 25 somites
Specimen
4B WT 25ss left:
(close )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 9.5
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Age Note:
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Age assigned by curator based on morphological criteria supplied by authors.
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Sex:
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Not Specified
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Type:
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whole mount
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Note:
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25 somites
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| Structure |
Level |
Pattern |
Image |
Note |
| TS15: branchial pouch |
Present |
Graded |
4B-5
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Expressed in a gradient, with lower expression in anterior pouches than in posterior pouches.
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Specimen
4B WT 25ss right:
embryonic day 9.5
(more )
Note: 25 somites
Specimen
4B WT 25ss right:
(close )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 9.5
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Age Note:
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Age assigned by curator based on morphological criteria supplied by authors.
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Sex:
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Not Specified
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Type:
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section from whole mount
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Embedding:
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Gelatin
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Note:
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25 somites
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| Structure |
Level |
Pattern |
Image |
Note |
| TS15: branchial pouch endoderm |
Present |
Graded |
4B-6
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Expressed in a gradient, with lower expression in anterior pouches than in posterior pouches.
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Specimen
4B -/- 25ss left:
(close )
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Genetic Background:
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involves: 129X1/SvJ * BALB/c
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Mutant Allele(s):
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Foxi3tm1.2Akg/Foxi3tm1.2Akg
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Age:
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embryonic day 9.5
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Age Note:
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Age assigned by curator based on morphological criteria supplied by authors.
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Sex:
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Not Specified
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Type:
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whole mount
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Note:
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25 somites
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Specimen
4B -/- 25ss right:
(close )
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Genetic Background:
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involves: 129X1/SvJ * BALB/c
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Mutant Allele(s):
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Foxi3tm1.2Akg/Foxi3tm1.2Akg
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Age:
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embryonic day 9.5
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Age Note:
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Age assigned by curator based on morphological criteria supplied by authors.
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Sex:
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Not Specified
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Type:
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section from whole mount
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Embedding:
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Gelatin
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Note:
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25 somites
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| Structure |
Level |
Pattern |
Image |
Note |
| TS15: branchial arch endoderm |
Present |
Widespread |
4B-8
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Continuous expression along the entire extent of pharyngeal endoderm, and persisted in the anterior pharyngeal region.
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Analysis Tools