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Gene Expression Data
Assay Details
Assay
Reference: J:130321 Sato H, et al., Visualizing expression patterns of Shh and Foxf1 genes in the foregut and lung buds by optical projection tomography. Pediatr Surg Int. 2008 Jan;24(1):3-11
Assay type: RNA in situ
MGI Accession ID: MGI:6728871
Gene symbol: Foxf1
Gene name: forkhead box F1
Probe: Foxf1 probe8
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 3A: embryonic day 9.0 (more )
Structure Level Pattern Image Note
TS14: foregut mesenchyme Strong Regionally restricted 3A Strong expression in anterior mesenchyme in region of foregut.
TS14: neural tube Strong Regionally restricted 3A Strong expression in ventral part of neural tube.
Specimen 3B: embryonic day 9.0 (more )
Note: Imaged by optical projection tomography (OPT).
Structure Level Pattern Image Note
TS14: floor plate Present 3B
TS14: notochord Present 3B
TS14: foregut mesenchyme Present Regionally restricted 3B Expression in mesenchyme associated with foregut.
Specimen 3C: embryonic day 9.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS14: floor plate Present 3C
TS14: notochord Present 3C
TS14: foregut mesenchyme Present 3C
Specimen 3D: embryonic day 9.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS14: foregut mesenchyme Present 3D
Specimen 3E: embryonic day 9.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS14: foregut mesenchyme Present 3E
Specimen 3F: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: central nervous system Present Regionally restricted 3F Expression in ventral central nervous system.
TS16: diencephalon Strong 3F Particularly strong expression in diencephalon, midbrain and hindbrain.
TS16: future hindbrain Strong 3F Particularly strong expression in diencephalon, midbrain and hindbrain.
TS16: future midbrain Strong 3F Particularly strong expression in diencephalon, midbrain and hindbrain.
TS16: visceral organ system Present Regionally restricted 3F Expression in viscera at level of the foregut.
TS16: forelimb bud Present Regionally restricted 3F Expression in posterior of forelimb buds.
Specimen 3G: embryonic day 10.0 (more )
Note: Imaged by optical projection tomography (OPT).
Structure Level Pattern Image Note
TS16: foregut mesenchyme Present Regionally restricted 3G Expression in viscera in mesenchyme around foregut, most intense in ventral aspect and around lung buds.
Specimen 3H: embryonic day 10.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS16: central nervous system Present Regionally restricted 3H Expression in ventral central nervous system.
TS16: visceral organ system Present Regionally restricted 3H Expression in viscera at level of the foregut.
Specimen 3I: embryonic day 10.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS16: lung mesenchyme Present 3I
Specimen 3J: embryonic day 10.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS16: lung mesenchyme Present 3J
Specimen 3K: embryonic day 10.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS16: stomach Strong 3K Particularly strong expression in mesenchyme of posterior enlargement of foregut where stomach is developing.
Specimen 3L: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: brain Present Regionally restricted 3L Expression in ventral neural tube appears to be restricted to brain region and trunk between levels of hindlimb buds.
TS18: neural tube Present Regionally restricted 3L Expression in ventral neural tube appears to be restricted to brain region and trunk between levels of hindlimb buds.
Specimen 3M: embryonic day 11.0 (more )
Note: Imaged by optical projection tomography (OPT).
Structure Level Pattern Image Note
TS18: neural tube Present Regionally restricted 3M Continuous expression in ventral neural tube.
TS18: limb bud Present Regionally restricted 3M Increased expression in posterior of limb buds.
Specimen 3N: embryonic day 11.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS18: neural tube Present Regionally restricted 3N Continuous expression in ventral neural tube.
TS18: laryngo-tracheal groove Present Regionally restricted 3N Expression at division of trachea from foregut.
TS18: lung mesenchyme Present 3N
Specimen 3O: embryonic day 11.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS18: neural tube Present Regionally restricted 3O Continuous expression in ventral neural tube.
TS18: laryngo-tracheal groove Present Regionally restricted 3O Expression at division of trachea from foregut.
TS18: lung mesenchyme Present 3O
Specimen 3P: embryonic day 11.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS18: laryngo-tracheal groove Present Regionally restricted 3P Expression in mesenchyme surrounding laryngotracheal groove.
Specimen 3Q: embryonic day 11.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS18: laryngo-tracheal groove Present Regionally restricted 3Q
TS18: lung mesenchyme Present 3Q
Specimen 3R: embryonic day 11.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS18: laryngo-tracheal groove Present Regionally restricted 3R Expression at division of trachea from foregut.
TS18: lung mesenchyme Present 3R
Specimen 3S: embryonic day 11.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS18: lung mesenchyme Present Regionally restricted 3S Expression extending into mesenchyme around lung buds in more caudal sections.
TS18: stomach Strong 3S Strong expression in forming stomach.
Specimen 4A: embryonic day 12.0 (more )
Structure Level Pattern Image Note
TS20: trunk Ambiguous 4A Authors state that the dissected trunk region showed little detail on superficial examination.
Specimen 4B: embryonic day 12.0 (more )
Note: Imaged by optical projection tomography (OPT).
Structure Level Pattern Image Note
TS20: floor plate Present 4B
TS20: lung mesenchyme Present 4B
Specimen 4C: embryonic day 12.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS20: esophagus mesenchyme Present Regionally restricted 4C Expression in splanchnic mesoderm around esophagus.
Specimen 4D: embryonic day 12.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS20: lung mesenchyme Present Regionally restricted 4D Expression in splanchnic mesoderm around lung buds.
Specimen 4E: embryonic day 12.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS20: lung mesenchyme Present Regionally restricted 4E Expression in splanchnic mesoderm around lung buds.
Specimen 4F: embryonic day 12.0 (more )
Note: Image is a virtual section generated from OPT.
Structure Level Pattern Image Note
TS20: esophagus mesenchyme Present Regionally restricted 4F Expression in splanchnic mesoderm around esophagus.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/30/2025
MGI 6.24 		The Jackson Laboratory