About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:53409 Murdoch JN, et al., Sequence and expression analysis of Nhlh1: a basic helix-loop-helix gene implicated in neurogenesis. Dev Genet. 1999;24(1-2):165-77
Assay type: RNA in situ
MGI Accession ID: MGI:6452588
Gene symbol: Nhlh1
Gene name: nescient helix loop helix 1
Probe: Nhlh1 probe2
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 2C: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: embryo Absent 2C

Specimen E9.5 wildtype whole mount not shown: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: facio-acoustic preganglion complex Present
TS15: trigeminal preganglion Present
TS15: central nervous system Present Regionally restricted Expression in rostral 2/3rds of neural tube.

Specimen 2D: embryonic day 9.5; Vangl2Lp/Vangl2+ (more )
Structure Level Pattern Image Note
TS15: facio-acoustic preganglion complex Present 2D
TS15: trigeminal preganglion Present 2D
TS15: central nervous system Present Regionally restricted 2D Expression in rostral 2/3rds of neural tube.

Specimen 2E: embryonic day 9.5; Vangl2Lp/Vangl2Lp (more )
Structure Level Pattern Image Note
TS15: facio-acoustic preganglion complex Present 2E
TS15: trigeminal preganglion Present 2E
TS15: central nervous system Present Regionally restricted 2E Expression in rostral 2/3rds of neural tube.

Specimen E9.5 wildtype section not shown: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: neural tube Present Regionally restricted At level of heart, expression at lateral edge of ventricular zone in ventral half of neural tube.
TS15: neural tube floor plate Absent

Specimen 2F: embryonic day 9.5; Vangl2Lp/Vangl2+ (more )
Structure Level Pattern Image Note
TS15: neural tube Present Regionally restricted 2F At level of heart, expression at lateral edge of ventricular zone in ventral half of neural tube.
TS15: neural tube floor plate Absent 2F

Specimen 2G: embryonic day 9.5; Vangl2Lp/Vangl2Lp (more )
Structure Level Pattern Image Note
TS15: neural tube Present Regionally restricted 2G At level of heart, expression at lateral edge of ventricular zone in ventral half of neural tube.
TS15: neural tube floor plate Absent 2G

Specimen 3A: embryonic day 10.5; Vangl2Lp/Vangl2+ (more )
Structure Level Pattern Image Note
TS17: facio-acoustic ganglion complex Strong 3A Increased intensity of expression in trigeminal and facio-acoustic ganglia.
TS17: trigeminal ganglion Strong 3A Increased intensity of expression in trigeminal and facio-acoustic ganglia.
TS17: neural tube Strong 3A Increased intensity of expression in neural tube.

Specimen 3B: embryonic day 10.5; Vangl2Lp/Vangl2Lp (more )
Structure Level Pattern Image Note
TS17: facio-acoustic ganglion complex Strong 3B Increased intensity of expression in trigeminal and facio-acoustic ganglia.
TS17: trigeminal ganglion Strong 3B Increased intensity of expression in trigeminal and facio-acoustic ganglia.
TS17: neural tube Strong 3B Increased intensity of expression in neural tube.

Specimen E10.5 wildtype whole mount: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: neural tube Present Regionally restricted At level of the heart, expression in ventral half of neural tube at lateral edge of ventricular zone. Expression also in dorsal 1/5th of neural tube, at lateral edge of ventricular zone. Region between dorsal and ventral domains absent for expression.
TS17: neural tube floor plate Absent
TS17: neural tube roof plate Absent

Specimen 3C: embryonic day 10.5; Vangl2Lp/Vangl2+ (more )
Structure Level Pattern Image Note
TS17: neural tube Present Regionally restricted 3C At level of the heart, expression in ventral half of neural tube at lateral edge of ventricular zone. Expression also in dorsal 1/5th of neural tube, at lateral edge of ventricular zone. Region between dorsal and ventral domains absent for expression.
TS17: neural tube floor plate Absent 3C
TS17: neural tube roof plate Absent 3C

Specimen 3D: embryonic day 10.5; Vangl2Lp/Vangl2Lp (more )
Structure Level Pattern Image Note
TS17: neural tube Present Regionally restricted 3D At level of the heart, expression in ventral half of neural tube at lateral edge of ventricular zone. Expression also in region corresponding to dorsal neural tube, at lateral edge of ventricular zone. Region between dorsal and ventral domains absent for expression.
TS17: neural tube floor plate Absent 3D
TS17: neural tube roof plate Absent 3D

Specimen 3E: embryonic day 10.5; Vangl2Lp/Vangl2+ (more )
Structure Level Pattern Image Note
TS17: neural tube Present Regionally restricted 3E At more caudal level, expression only in ventral half of neural tube, at lateral edge of ventricular zone. Expression in few cells more medially, within area of ventricular zone.

Specimen 3F: embryonic day 10.5; Vangl2Lp/Vangl2+ (more )
Structure Level Pattern Image Note
TS17: neural tube Present Regionally restricted 3F At even more caudal level, Expression is not detectable.

Specimen 4A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: facio-acoustic ganglion complex Present 4A
TS17: trigeminal ganglion Present 4A
TS17: central nervous system Present 4A
TS17: peripheral nervous system Present Regionally restricted 4A Expression in streams of cells entering the heart, corresponding to the vagus nerve.
TS17: dorsal root ganglion Present Regionally restricted 4A Higher levels of expression in more rostral dorsal root ganglia (DRG); lower levels in more caudal DRG.

Specimen 4B: embryonic day 10.5; Vangl2Lp/Vangl2Lp (more )
Structure Level Pattern Image Note
TS17: facio-acoustic ganglion complex Present 4B
TS17: trigeminal ganglion Present 4B
TS17: central nervous system Present 4B
TS17: peripheral nervous system Present Regionally restricted 4B Expression in streams of cells entering the heart, corresponding to the vagus nerve.
TS17: dorsal root ganglion Present Regionally restricted 4B Higher levels of expression in more rostral dorsal root ganglia (DRG); lower levels in more caudal DRG.

Specimen 4C: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: neural tube Present Regionally restricted 4C At level of forelimb bud, stripe of expression along lateral edge of ventricular zone, interrupted by a region lacking expression immediately dorsal to presumptive sulcus limitans. No expression in ventrolateral area of neural tube.
TS17: neural tube floor plate Absent 4C
TS17: neural tube roof plate Absent 4C
TS17: dorsal root ganglion Present 4C

Specimen 4D: embryonic day 10.5; Vangl2Lp/Vangl2Lp (more )
Structure Level Pattern Image Note
TS17: neural tube Present Regionally restricted 4D At level of forelimb bud, stripe of expression along lateral edge of ventricular zone, interrupted by a region lacking expression immediately dorsal to presumptive sulcus limitans. No expression in ventrolateral area of neural tube.
TS17: neural tube floor plate Absent 4D
TS17: neural tube roof plate Absent 4D
TS17: dorsal root ganglion Present 4D

Specimen 4E: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: neural tube Present Regionally restricted 4E At level of hindlimb bud, expression restricted to ventral 1/4 of neural tube. Expression detected more medially, not just restricted to lateral edge.

Specimen 4F: embryonic day 10.5 (more )
Note: Double labeled: blue - Nhlh1; brown - Isl1 (assay MGI:6452589).
Structure Level Pattern Image Note
TS17: neural tube Present Regionally restricted 4F Expression at lateral edge of ventricular zone. No expression in ventrolateral region of neural tube.
TS17: dorsal root ganglion Present 4F

Specimen 4G: embryonic day 10.5 (more )
Note: Double labeled: blue - Nhlh1; brown - Isl1 (assay MGI:6452589).
Structure Level Pattern Image Note
TS17: neural tube Present Regionally restricted 4G Expression at lateral edge of ventricular zone. No expression in ventrolateral region of neural tube.
TS17: dorsal root ganglion Present 4G


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory