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Gene Expression Data
Assay Details
Assay
Reference: J:106097 Rachidi M, et al., Differential transcription of Barhl1 homeobox gene in restricted functional domains of the central nervous system suggests a role in brain patterning. Int J Dev Neurosci. 2006 Feb;24(1):35-44
Assay type: RNA in situ
MGI Accession ID: MGI:6273657
Gene symbol: Barhl1
Gene name: BarH like homeobox 1
Probe: Barhl1 cDNA2
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 2A: embryonic day 8.5-9.0 (more )
Structure Level Pattern Image Note
TS13: embryo Absent 2A

Specimen 2B: embryonic day 10.5-11.0 (more )
Structure Level Pattern Image Note
TS18: diencephalon Present Regionally restricted 2B Expression was detected in the basal plate of the diencephalon, dorsal and ventral thalamus, and the mammillary area.
TS18: forebrain-midbrain boundary region Present Regionally restricted 2B Expression was detected in the alar and caudal region of the pretectum.
TS18: midbrain Present Regionally restricted 2B Expression was detected in the alar plate of the mesencephalon.
TS18: rhombic lip Present Regionally restricted 2B The anterior and posterior rhombic lip was labeled.
TS18: telencephalon Absent 2B

Specimen 2C: embryonic day 10.5-11.0 (more )
Structure Level Pattern Image Note
TS18: future spinal cord Present Regionally restricted 2C Expression was detected in the dorsal alar plate.
TS18: neural tube roof plate Absent 2C

Specimen 2D: embryonic day 13.5-14.0 (more )
Structure Level Pattern Image Note
TS22: inferior colliculus Present 2D
TS22: mammillary area Present 2D
TS22: superior colliculus Present 2D
TS22: cerebellum layer Present Regionally restricted 2D Expression was detected in the external granular cell layer.
TS22: hindbrain Present Regionally restricted 2D Expression was detected in the anterior and posterior extramural migratory stream.

Specimen 2E: embryonic day 13.5-14.0 (more )
Structure Level Pattern Image Note
TS22: inferior colliculus Present 2E
TS22: mammillary area Present 2E
TS22: superior colliculus Present 2E
TS22: cerebellum layer Present Regionally restricted 2E Expression was detected in the external granular cell layer.
TS22: hindbrain Present Regionally restricted 2E Expression was detected in the anterior and posterior extramural migratory stream.
TS22: spinal cord Present Regionally restricted 2E Expression was detected in the middle of the spinal cord.

Specimen 3A/B: embryonic day 10.5-11.0 (more )
Structure Level Pattern Image Note
TS18: midbrain Present Regionally restricted 3A/B In the mesencephalon, expression was observed in a subtle cell layer of migrating cells in the cortical plate of the alar plate.

Specimen 3D/E: embryonic day 10.5-11.0 (more )
Structure Level Pattern Image Note
TS18: diencephalon Present Regionally restricted 3D/E Expression was detected in the basal plate of the diencephalon, dorsal and ventral thalamus, and the mammillary area.

Specimen 3G/H: embryonic day 10.5-11.0 (more )
Structure Level Pattern Image Note
TS18: rhombic lip Present Regionally restricted 3G/H In the anterior rhombic lip, expression was particularly noted in the dorsal part of the alar plate corresponding to the progenitor cells of the external granular cell layer.

Specimen 4A/B: embryonic day 13.5-14.0 (more )
Structure Level Pattern Image Note
TS22: superior colliculus Weak Regionally restricted 4A/B Expression was detected at a relatively lower level. Signal was localized in the cortical plate.

Specimen 4C/D: embryonic day 13.5-14.0 (more )
Structure Level Pattern Image Note
TS22: mammillary area Present 4C/D
TS22: hindbrain Present Regionally restricted 4C/D Expression was detected in the anterior extramural migratory stream.

Specimen 4E/F: embryonic day 13.5-14.0 (more )
Structure Level Pattern Image Note
TS22: cerebellum layer Strong Regionally restricted 4E/F High expression was detected in the external granular cell layer.
TS22: inferior colliculus Present Regionally restricted 4E/F Expression was detected in the dorsal and anterior part of the inferior colliculus.

Specimen 5A/B: embryonic day 10.5-11.0 (more )
Structure Level Pattern Image Note
TS18: future spinal cord Present Regionally restricted 5A/B Expression was in the most dorsal area of the alar plate.
TS18: neural tube roof plate Absent 5A/B

Specimen 5D/E: embryonic day 13.5-14.0 (more )
Structure Level Pattern Image Note
TS22: spinal cord mantle layer Present 5D/E Expression was delimited to the boundary of the mantle zone between the alar and the basal plates.


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory