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Gene Expression Data
Assay Details
Assay
Reference: J:260421 Mesman S, et al., Expression analyzes of early factors in midbrain differentiation programs. Gene Expr Patterns. 2018 Jan;27:8-15
Assay type: RNA in situ
MGI Accession ID: MGI:6258328
Gene symbol: Neurod1
Gene name: neurogenic differentiation 1
Probe: Neurod1 probe9
Probe preparation: labelled with digoxigenin
Visualized with: Alkaline phosphatase
Results
Specimen 3A E11.5 Lateral: embryonic day 11.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS19: midbrain Present 3A E11.5 Lateral Specific expression in midbrain area at E11.5.
TS19: prosomere 1 Present 3A E11.5 Lateral Expression into the prosomere 3 area.
TS19: prosomere 2 Present 3A E11.5 Lateral Expression into the prosomere 3 area.
TS19: prosomere 3 Present 3A E11.5 Lateral Expression into the prosomere 3 area.
Specimen 3A E11.5 Medial: embryonic day 11.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS19: midbrain Present 3A E11.5 Medial Specific expression in midbrain area at E11.5.
TS19: prosomere 1 Present 3A E11.5 Medial Expression into the prosomere 3 area.
TS19: prosomere 2 Present 3A E11.5 Medial Expression into the prosomere 3 area.
TS19: prosomere 3 Present 3A E11.5 Medial Expression into the prosomere 3 area.
Specimen 3A E12.5 Lateral: embryonic day 12.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS20: midbrain Present 3A E12.5 Lateral Specific expression in midbrain area.
TS20: prosomere 1 Strong 3A E12.5 Lateral Expression into the prosomere 3 area.
TS20: prosomere 2 Strong 3A E12.5 Lateral Expression into the prosomere 3 area.
TS20: prosomere 3 Strong 3A E12.5 Lateral Expression into the prosomere 3 area.
Specimen 3A E12.5 Medial: embryonic day 12.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS20: midbrain Present 3A E12.5 Medial Specific expression in midbrain area.
TS20: prosomere 1 Present 3A E12.5 Medial Expression into the prosomere 3 area.
TS20: prosomere 2 Present 3A E12.5 Medial Expression into the prosomere 3 area.
TS20: prosomere 3 Present 3A E12.5 Medial Expression into the prosomere 3 area.
Specimen 3A1: embryonic day 12.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS20: midbrain Present Regionally restricted 3A1 Expression overlaps with caudal part of Th-expressing neuronal population in midbrain.
Specimen 3A E14.5 Lateral: embryonic day 14.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS22: midbrain Ambiguous 3A E14.5 Lateral
Specimen 3A E14.5 Medial: embryonic day 14.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS22: prosomere 2 Present Regionally restricted 3A E14.5 Medial Expression overlaps with Th-expressing neurons in rostral part of mdDA (mesodiencephalic dopaminergic) area in prosomeres 2 and 3.
TS22: prosomere 3 Present Regionally restricted 3A E14.5 Medial Expression overlaps with Th-expressing neurons in rostral part of mdDA (mesodiencephalic dopaminergic) area in prosomeres 2 and 3.
Specimen 3A2: embryonic day 14.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS22: prosomere 2 Present Regionally restricted 3A2 Expression overlaps with Th-expressing neurons in rostral part of mdDA (mesodiencephalic dopaminergic) area in prosomeres 2 and 3.
TS22: prosomere 3 Present Regionally restricted 3A2 Expression overlaps with Th-expressing neurons in rostral part of mdDA (mesodiencephalic dopaminergic) area in prosomeres 2 and 3.
Specimen 3B E11.5 Rostral: embryonic day 11.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS19: midbrain floor plate Present Regionally restricted 3B E11.5 Rostral Expression mainly in subventricular zone of floor plate and basal plate of midbrain.
Specimen 3B E11.5 Caudal: embryonic day 11.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS19: midbrain mantle layer Present Regionally restricted 3B E11.5 Caudal Expression mainly in subventricular zone of floor plate and basal plate of midbrain.
Specimen 3B E12.5 Rostral: embryonic day 12.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS20: midbrain floor plate Present Regionally restricted 3B E12.5 Rostral Expression overlaps with rostral part of Th-expressing neuronal population.
Specimen 3B E12.5 Caudal: embryonic day 12.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS20: midbrain floor plate Present Regionally restricted 3B E12.5 Caudal Expression overlaps with rostral part of Th-expressing neuronal population.
Specimen 3B1: embryonic day 12.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS20: midbrain floor plate Present Regionally restricted 3B1 Expression overlaps with rostral part of Th-expressing neuronal population.
Specimen 3B E14.5 Rostral: embryonic day 14.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS22: midbrain mantle layer Present Regionally restricted 3B E14.5 Rostral Expression in midbrain subventricular zone, just below the ventricular zone, overlapping Th-expressing neuronal population.
Specimen 3B E14.5 Caudal: embryonic day 14.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS22: midbrain mantle layer Present Regionally restricted 3B E14.5 Caudal Expression in midbrain subventricular zone, just below the ventricular zone, overlapping Th-expressing neuronal population.
Specimen 3B2: embryonic day 14.5 (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS22: midbrain mantle layer Present Regionally restricted 3B2 Expression in midbrain subventricular zone, just below the ventricular zone, overlapping Th-expressing neuronal population.
Specimen 3B Adult: postnatal adult (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS28: substantia nigra Weak 3B Adult Weak expression in neurons that are part of the substantia nigra.
Specimen 3B3: postnatal adult (more )
Note: Double labeled: blue - Neurod1; brown - Th (assay MGI:6258336).
Structure Level Pattern Image Note
TS28: substantia nigra Weak 3B3 Weak expression in neurons that are part of the substantia nigra.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory