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Gene Expression Data
Assay Details
Assay
Reference: J:223387 Goff LA, et al., Spatiotemporal expression and transcriptional perturbations by long noncoding RNAs in the mouse brain. Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):6855-62
Assay type: In situ reporter (knock in)
MGI Accession ID: MGI:5805637
Gene symbol: Pantr1
Gene name: POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1
Reporter: lacZ
Direct Detection
Results
Specimen 4C Pantr1: postnatal week 7.6-14.1; Pantr1tm1Vlcg/Pantr1+ (more )
Structure Level Pattern Image Note
TS28: CA1 pyramidal cell layer Strong 4C Pantr1 upper left , 4C Pantr1 lower left
TS28: CA2 pyramidal cell layer Strong 4C Pantr1 upper left , 4C Pantr1 lower left
TS28: cortical layer II Strong 4C Pantr1 upper right , 4C Pantr1 upper left
TS28: cortical layer III Strong 4C Pantr1 upper right , 4C Pantr1 upper left
TS28: cortical layer IV Strong 4C Pantr1 upper right , 4C Pantr1 upper left
TS28: cortical layer V Present 4C Pantr1 upper left , 4C Pantr1 upper right
TS28: cortical layer VI Present 4C Pantr1 upper left , 4C Pantr1 upper right
TS28: caudate-putamen Strong 4C Pantr1 upper left
TS28: habenula Ambiguous 4C Pantr1 upper left , 4C Pantr1 lower right Staining was almost completely absent.
Specimen Dataset2: postnatal week 7.6-14.1; Pantr1tm1Vlcg/Pantr1+ (more )
Structure Level Pattern Image Note
TS28: brain Present Dataset S2 Pantr1
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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01/20/2026
MGI 6.24 		The Jackson Laboratory