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Gene Expression Data
Assay Details
Assay
Reference: J:83324 Kalinichenko VV, et al., The forkhead box F1 transcription factor is expressed in brain and head mesenchyme during mouse embryonic development. Gene Expr Patterns. 2003 May;3(2):153-8
Assay type: In situ reporter (knock in)
MGI Accession ID: MGI:5755125
Gene symbol: Foxf1
Gene name: forkhead box F1
Reporter: lacZ
Direct Detection
Results
Specimen 1A: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: head mesenchyme Present Regionally restricted 1A Expression was detected in the mesenchyme surrounding the infundibular recess of the third ventricle.
TS20: remnant of Rathke's pouch Present 1A
Specimen 1B: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: esophagus Present 1B
TS20: genital tubercle Present 1B
TS20: intestine Present 1B
TS20: trachea Present 1B
Specimen 1C: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: genital tubercle Present 1C
TS20: intestine Present 1C
TS20: lung Present 1C
TS20: oral region mesenchyme Present 1C
TS20: axial skeleton Present 1C Expression was detected in vertebral bodies.
Specimen 1D: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: head mesenchyme Present Regionally restricted 1D Expression was detected in the mesenchyme surrounding the infundibular recess of the third ventricle.
TS20: cerebellum primordium Ambiguous Regionally restricted 1D Expression was not detected in the ventricular zone of the cerebellar primordium.
Specimen 1E: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: head mesenchyme Present Regionally restricted 1E Expression was detected in the mesenchyme surrounding the infundibular recess of the third ventricle.
TS20: remnant of Rathke's pouch Present 1E
Specimen 1F: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: lens vesicle Present 1F
TS20: optic stalk Present Regionally restricted 1F Expression was detected in the optic nerve.
Specimen 1G: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: tongue mesenchyme Present 1G
TS20: vomeronasal organ Present 1G
Specimen 1H: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: nasal mesenchyme Present 1H
TS20: tongue mesenchyme Present 1H
Specimen 1I: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS19: 1st branchial pouch Present 1I
Specimen 1J: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: embryo Present 1J
Specimen 1K: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: esophagus Present 1K
TS20: notochord Present 1K
TS20: trachea Present 1K
Specimen 1L: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: choroid plexus Present 1L
Specimen 1M: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: Meckel's cartilage Present 1M
TS20: nasal septum Present Regionally restricted 1M Expression was detected in the cartilage primorida of the nasal septum.
Specimen 1N: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: oral region mesenchyme Present 1N
TS20: optic stalk Present Regionally restricted 1N Expression was detected in the optic nerve.
Specimen 1O: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: Meckel's cartilage Present 1O
TS20: remnant of Rathke's pouch Present 1O
Specimen 1P: embryonic day 9.5; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS15: future brain Present Regionally restricted 1P , 1Q Expression was detected in brain mesenchyme between the fourth ventricle and Rathke's pouch.
Specimen 1R: embryonic day 9.5; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS15: pharynx mesenchyme Present 1R , 1S
Specimen 2B: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: adenohypophysis Present 2B
TS28: neurohypophysis Present 2B
Specimen 2C: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: neurohypophysis Present 2C
Specimen 2D: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: adenohypophysis Present 2D
Specimen 2F: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: lens Present 2F
Specimen 2G: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: retina outer nuclear layer Present 2G
Specimen 2H: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: retina outer nuclear layer Present 2H
Specimen 2J: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: cerebellum Present 2J Expression was interspersed throughout the cortical layers. Expression was in astrocytes.
Specimen 2K: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: cerebellum Present 2K Expression was interspersed throughout the cortical layers. Expression was in astrocytes.
Specimen 2L: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: cerebellum Present 2L Expression was interspersed throughout the cortical layers. Expression was detected in astrocytes.
Specimen 2M: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: brain meninges Present 2M Expression was in meningothelial cells.
TS28: cerebral cortex Present 2M Expression was interspersed throughout the cortical layers.
Specimen 2N: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: brain blood vessel Present 2N Expression was in pericytes of the blood vessels.
Specimen 3B: embryonic day 18.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS26: trachea cartilaginous ring Present 3B
TS26: trachea mesenchyme Present 3B
Specimen 3C: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: trachea cartilage Present 3C
Specimen 3D: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: thymus cortex Present 3D
Specimen 3E: embryonic day 12.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS20: trunk mesenchyme Present Regionally restricted 3E Expression was detected in the mesenchymal cells of the pericardial cavity.
Specimen 3F: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: coronary artery Present 3F
Specimen 3G: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: heart Present 3G
Specimen 3H: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: spleen capsule Present 3H
Specimen 3I: embryonic day 15.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS23: intestine mesenchyme Present 3I
TS23: pancreas mesenchyme Present 3I
Specimen 3J: embryonic day 15.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS23: pancreas mesenchyme Present 3J
Specimen 3K: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: blood vessel Present 3K
TS28: pancreas Present 3K
Specimen 3L: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: parathyroid gland Present 3L
TS28: thyroid gland Present 3L
Specimen 3M: embryonic day 9.5; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS15: midgut mesenchyme Present 3M
Specimen 3N: embryonic day 9.5; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS15: trunk mesenchyme Present Regionally restricted 3N Expression was detected in the mesenchyme surrounding the peritoneal cavity.
Specimen 3O: embryonic day 15.0; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS23: intestine mesenchyme Present 3O
Specimen 3P: postnatal adult; Foxf1tm1Rhc/Foxf1+ (more )
Structure Level Pattern Image Note
TS28: intestine smooth muscle Present 3P Expression was in muscle layers of the intestine.
TS28: intestine lamina propria Present 3P
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory