About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:154364 Beaubien F, et al., Differential expression of slitrk family members in the mouse nervous system. Dev Dyn. 2009 Nov 18;238(12):3285-3296
Assay type: RNA in situ
MGI Accession ID: MGI:5578588
Gene symbol: Slitrk5
Gene name: SLIT and NTRK-like family, member 5
Probe: MGC clone 86113
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: brain Present Widespread 1E
TS26: hippocampus Strong 1E
TS26: hypothalamus Present Regionally restricted 1E Expressed in the ventral medial hypothalamic nucleus.
Specimen 2E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: main olfactory bulb Present Regionally restricted 2E Expressed in the mitral cell layer, olfactory nerve layer and granular cell layer.
Specimen 2K: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb granule cell layer Present 2K
TS28: main olfactory bulb mitral cell layer Present 2K
TS28: main olfactory bulb glomerular layer Absent 2K
Specimen 3I: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cortical plate Strong 3I
TS26: cortical subplate Strong 3I
TS26: cerebral cortex ventricular zone Absent 3I
Specimen 3J: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: cortical layer II Present 3J
TS28: cortical layer III Present 3J
TS28: cortical layer IV Present 3J
TS28: cortical layer V Present 3J
TS28: cortical layer VI Present 3J
Specimen 4E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: dentate gyrus Strong 4E
TS26: hippocampus CA1 Strong 4E
TS26: hippocampus CA3 Strong 4E
Specimen 4K: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Strong 4K
TS28: hippocampus CA1 Strong 4K
TS28: hippocampus CA3 Strong 4K
Specimen 6E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cerebellum Strong 6E Expressed in all layers of the developing cerebellum, including the molecular layer.
TS26: cerebellum Purkinje cell layer Strong 6E
TS26: cerebellum lateral part mantle layer Strong 6E
TS26: cerebellum lateral part marginal layer Strong 6E
TS26: cerebellum lateral part ventricular layer Strong 6E
TS26: inferior colliculus Strong 6E
TS26: superior colliculus Strong 6E
Specimen 7E: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Present 7E
TS28: cerebellum internal granule cell layer Present 7E
TS28: cerebellum molecular layer Present 7E
TS28: deep cerebellar nucleus Present 7E
Specimen 8E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: spinal cord Present Regionally restricted 8E Expressed in the gray matter. Higher levels of expression are observed in the ventral part where motor neurons are located.
TS26: dorsal root ganglion Present Regionally restricted 8E Expressed in a subset of sensory neuron nuclei.
Specimen 9E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: trigeminal ganglion Strong Regionally restricted 9E Expressed in subsets of cell bodies.
Specimen 10E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: neural retina Present Regionally restricted 10E Expressed in the retinal ganglion cell layer and prospective inner nuclear layer.
TS26: retina inner nuclear layer Present 10E
Specimen not shown: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: olfactory epithelium Present
TS26: vomeronasal organ Absent
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory