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Gene Expression Data
Assay Details
Assay
Reference: J:154364 Beaubien F, et al., Differential expression of slitrk family members in the mouse nervous system. Dev Dyn. 2009 Nov 18;238(12):3285-3296
Assay type: RNA in situ
MGI Accession ID: MGI:5578586
Gene symbol: Slitrk3
Gene name: SLIT and NTRK-like family, member 3
Probe: MGC clone 90025
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1C: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: brain Present Widespread 1C
TS26: trigeminal ganglion Present 1C
TS26: hippocampus Strong 1C
Specimen 2C: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: main olfactory bulb Present Regionally restricted 2C Expressed in the granule cell layer and in the mitral cell layer.
Specimen 2I: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb granule cell layer Present 2I
TS28: main olfactory bulb mitral cell layer Present 2I
Specimen 3E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cortical plate Weak Regionally restricted 3E Expressed only in a single layer.
TS26: cerebral cortex ventricular zone Absent 3E
Specimen 3F: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: cortical layer II Present 3F
TS28: cortical layer III Present 3F
TS28: cortical layer IV Present 3F
TS28: cortical layer V Present 3F
TS28: cortical layer VI Present 3F
Specimen 4C: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: dentate gyrus Strong 4C
TS26: hippocampus CA1 Strong 4C
TS26: hippocampus CA3 Strong 4C
Specimen 4I: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Strong 4I
TS28: hippocampus CA1 Strong 4I
TS28: hippocampus CA3 Strong 4I
Specimen 6C: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: inferior colliculus Strong 6C
TS26: superior colliculus Strong 6C
TS26: cerebellum Purkinje cell layer Present 6C
TS26: cerebellum Present Regionally restricted 6C Expressed in the molecular layer, the medial cerebellar nucleus, and the lateral cerebellar nucleus.
Specimen 7C: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Weak 7C
TS28: deep cerebellar nucleus Weak 7C
TS28: cerebellum internal granule cell layer Absent 7C
Specimen 8C: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: spinal cord Present Regionally restricted 8C Expressed in the gray matter.
TS26: dorsal root ganglion Present Regionally restricted 8C Expressed in a subset of sensory neuron nuclei.
Specimen 9C: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: trigeminal ganglion Strong Regionally restricted 9C Expressed in subsets of cell bodies.
Specimen 10C: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: neural retina Present Regionally restricted 10C Expressed in the prospective inner nuclear layer, and low expression in the retinal ganglion cell layer.
TS26: retina inner nuclear layer Present 10C
Specimen not shown: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: vomeronasal organ Absent
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/23/2024
MGI 6.23 		The Jackson Laboratory