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Gene Expression Data
Assay Details
Assay
Reference: J:154364 Beaubien F, et al., Differential expression of slitrk family members in the mouse nervous system. Dev Dyn. 2009 Nov 18;238(12):3285-3296
Assay type: RNA in situ
MGI Accession ID: MGI:5578552
Gene symbol: Slitrk1
Gene name: SLIT and NTRK-like family, member 1
Probe: IMAGE clone 9007276
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1A: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: brain Present Widespread 1A
TS26: hippocampus Strong 1A

Specimen 2A: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: main olfactory bulb Present Regionally restricted 2A Expressed in the glomerular layer and in the mitral cell layer.

Specimen 2G: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb granule cell layer Present 2G
TS28: main olfactory bulb glomerular layer Absent 2G

Specimen 3A: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cortical plate Strong 3A
TS26: cortical subplate Strong 3A
TS26: cerebral cortex ventricular zone Weak Regionally restricted 3A Expressed in the basal part.

Specimen 3B: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: cortical layer II Present 3B
TS28: cortical layer III Present 3B
TS28: cortical layer IV Present 3B
TS28: cortical layer VI Present 3B

Specimen 4A: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: hippocampus CA1 Strong 4A
TS26: hippocampus CA3 Strong 4A
TS26: dentate gyrus Absent 4A

Specimen 4G: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: hippocampus CA1 Strong 4G
TS28: hippocampus CA3 Strong 4G
TS28: dentate gyrus Weak 4G

Specimen 6A: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cerebellum Purkinje cell layer Present Regionally restricted 6A Expressed as parasagital stripes.
TS26: cerebellum Present Regionally restricted 6A Expressed in the medial cerebellar nucleus, and the lateral cerebellar nucleus.
TS26: inferior colliculus Weak 6A
TS26: superior colliculus Weak 6A

Specimen 7A: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Present 7A
TS28: deep cerebellar nucleus Present 7A
TS28: cerebellum internal granule cell layer Present Regionally restricted 7A Expressed in the anterior lobes of the cerebellum.

Specimen 8A: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: spinal cord Present Regionally restricted 8A Expressed in the gray matter. Higher levels of expression are observed in the ventral part where motor neurons are located.
TS26: dorsal root ganglion Present Regionally restricted 8A Expressed in a subset of sensory neuron nuclei.

Specimen 9A: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: trigeminal ganglion Strong Regionally restricted 9A Expressed in subsets of cell bodies.

Specimen 10A: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: neural retina Present Regionally restricted 10A Expressed in the retinal ganglion cell layer and prospective inner nuclear layer.
TS26: retina inner nuclear layer Present 10A

Specimen not shown: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: vomeronasal organ Absent


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/23/2024
MGI 6.23
The Jackson Laboratory