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Gene Expression Data
Assay Details
Assay
Reference: J:142645 Sherwood RI, et al., Transcriptional dynamics of endodermal organ formation. Dev Dyn. 2008 Dec 18;238(1):29-42
Assay type: Immunohistochemistry
MGI Accession ID: MGI:5562906
Gene symbol: Sox2
Gene name: SRY (sex determining region Y)-box 2
Antibody: Anti-Sox2 (Y-17; sc-17320)
Detection system: Secondary antibody
Assay notes: Confocal microscopy.
Results
Specimen 3C: embryonic day 9.5 (more )
Note: Triple labeled: blue - Sox2; red - Cdx2 (assay MGI:5562893); green - Onecut1 (assay MGI:5562907).
Structure Level Pattern Image Note
TS15: embryo endoderm Present 3C Sox2 , 3C far right Expression is in the most anterior endodermal cells of the stomach-intestine border.
TS15: gut Present 3C Sox2 , 3C far right Expression is in the most anterior endodermal cells of the stomach-intestine border.

Specimen 3D: embryonic day 9.5 (more )
Note: Triple labeled: blue - Sox2; red - Cdx2 (assay MGI:5562893); green - Pdx1 (assay MGI:5562896).
Structure Level Pattern Image Note
TS15: embryo endoderm Present Regionally restricted 3D Sox2 , 3D far right Expression is in the most anterior endodermal cells of the stomach-intestine border.
TS15: gut Present Regionally restricted 3D Sox2 , 3D far right Expression is in the most anterior endodermal cells of the stomach-intestine border.

Specimen not shown: embryonic day 7.75 (more )
Structure Level Pattern Image Note
TS12: gut endoderm Present Regionally restricted Expression is in the most anterior and posterior cells.

Specimen 4A: embryonic day 8.25 (more )
Note: 4-6 somites. Triple labeled: green - Sox2; red - Cdx2 (assay MGI:5562893); blue - Foxa2 (assay MGI:5562658).
Structure Level Pattern Image Note
TS13: gut endoderm Present Regionally restricted 4A left panel , 4A right panel Expression extends posteriorly at the stomach-intestine border.

Specimen 4B: embryonic day 8.5 (more )
Note: 9-11 somites. Double labeled: green - Sox2; red - Cdx2 (assay MGI:5562893).
Structure Level Pattern Image Note
TS13: gut endoderm Present Regionally restricted 4B Expression extends posteriorly at the stomach-intestine border.

Specimen 4C: embryonic day 8.75 (more )
Note: 13-15 somites. Triple labeled: green - Sox2; red - Cdx2 (assay MGI:5562893); blue - Pdx1 (assay MGI:5562896).
Structure Level Pattern Image Note
TS14: gut Present Regionally restricted 4C left panel , 4C right panel Expression extends to the foregut-midgut junction.

Specimen 4H: embryonic day 8.5 (more )
Note: 6-8 somites. Triple labeled: green - Sox2; red - Cdx2 (assay MGI:5562893); blue - Onecut1 (assay MGI:5562907).
Structure Level Pattern Image Note
TS13: gut Present Regionally restricted 4H right panel


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory