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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5541561
Gene symbol: Jag1
Gene name: jagged 1
Probe: RIKEN clone 6230411J17 subclone 1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:8125: embryonic day 12.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: male reproductive system Present GUDMAP:8125
TS20: mesonephros of male Present Regionally restricted GUDMAP:8125
TS20: paramesonephric duct of male, mesonephric portion Present GUDMAP:8125
TS20: testis Absent GUDMAP:8125
TS20: nephric duct of male, mesonephric portion Absent GUDMAP:8125
TS20: mesonephric tubule of male Absent GUDMAP:8125
TS20: mesonephric mesenchyme of male Ambiguous GUDMAP:8125 possible regional signal in caudal mesonephros
Specimen GUDMAP:8126: embryonic day 12.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: urinary system Present GUDMAP:8126
TS20: metanephros Present Regionally restricted GUDMAP:8126
TS20: early nephron Present GUDMAP:8126
TS20: cap mesenchyme Absent GUDMAP:8126
TS20: nephrogenic interstitium Absent GUDMAP:8126
TS20: ureteric tip Ambiguous GUDMAP:8126
Specimen GUDMAP:8127: embryonic day 12.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: urogenital sinus Ambiguous GUDMAP:8127
TS20: primitive bladder Ambiguous GUDMAP:8127 possible weak signal
Specimen GUDMAP:8128: embryonic day 12.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: female reproductive system Present GUDMAP:8128
TS20: mesonephros of female Present GUDMAP:8128
TS20: paramesonephric duct of female, mesonephric portion Present GUDMAP:8128
TS20: ovary Absent GUDMAP:8128
TS20: mesonephric mesenchyme of female Absent GUDMAP:8128
TS20: nephric duct of female, mesonephric portion Absent GUDMAP:8128
TS20: mesonephric tubule of female Absent GUDMAP:8128
Specimen GUDMAP:8957: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple. The low level expression control (Shh) probe did not detect expression. Thus, low levels of expression may not be detected in this experiment.
Structure Level Pattern Image Note
TS23: urinary system Present Regionally restricted GUDMAP:8957
TS23: metanephros Present Regionally restricted GUDMAP:8957
TS23: renal cortex Present Regionally restricted GUDMAP:8957
TS23: renal vesicle Present Regionally restricted GUDMAP:8957 distal expression; signal appears strongest in the distal end of the renal vesicle
TS23: comma-shaped body Present GUDMAP:8957
TS23: s-shaped body Present Regionally restricted GUDMAP:8957
TS23: medial segment of s-shaped body Present GUDMAP:8957
TS23: cortical renal tubule Present Regionally restricted GUDMAP:8957 expression detected in the anlage of loop of Henle of maturing nephrons and in the tubules of capillary loop nephrons (anlage of loop of Henle and distal)
TS23: anlage of loop of Henle of cortical renal tubule Present Regionally restricted GUDMAP:8957 signal detected in a subset of these tubules
TS23: cortical early distal tubule Present Regionally restricted GUDMAP:8957 signal only detected in the early distal tubule of capillary loop nephrons not in the early distal tubule of maturing nephrons
TS23: renal cortical vasculature Present Regionally restricted GUDMAP:8957
TS23: maturing renal corpuscle Present Regionally restricted GUDMAP:8957 expression only detected in the juxtaglomerular arteriole
TS23: juxtaglomerular arteriole Present GUDMAP:8957
TS23: renal cortical arterial system Present GUDMAP:8957
TS23: renal medulla Present Regionally restricted GUDMAP:8957
TS23: immature loop of Henle Present Regionally restricted GUDMAP:8957 expression in a subset of the immature loop of Henle
TS23: developing capillary loop stage nephron group Present Regionally restricted GUDMAP:8957
TS23: maturing nephron Present Regionally restricted GUDMAP:8957
TS23: renal vasculature Present Regionally restricted GUDMAP:8957
TS23: early nephron Present GUDMAP:8957
TS23: late tubule Present Regionally restricted GUDMAP:8957
TS23: renal capsule Absent GUDMAP:8957
TS23: nephrogenic zone Absent GUDMAP:8957
TS23: nephrogenic interstitium Absent GUDMAP:8957
TS23: cap mesenchyme Absent GUDMAP:8957
TS23: pretubular aggregate Absent GUDMAP:8957
TS23: ureteric tip Absent GUDMAP:8957
TS23: ureteric tree terminal branch excluding tip itself Absent GUDMAP:8957
TS23: renal connecting tubule of s-shaped body Absent GUDMAP:8957
TS23: distal segment of s-shaped body Absent GUDMAP:8957
TS23: proximal segment of s-shaped body Absent GUDMAP:8957
TS23: visceral epithelium of s-shaped body Absent GUDMAP:8957
TS23: parietal epithelium of s-shaped body Absent GUDMAP:8957
TS23: capillary loop renal corpuscle Absent GUDMAP:8957
TS23: visceral epithelium of capillary loop renal corpuscle Absent GUDMAP:8957
TS23: parietal epithelium of capillary loop renal corpuscle Absent GUDMAP:8957
TS23: presumptive mesangium of capillary loop renal corpuscle Absent GUDMAP:8957
TS23: presumptive endothelium of capillary loop renal corpuscle Absent GUDMAP:8957
TS23: associated interstitium of capillary loop renal corpuscle Absent GUDMAP:8957
TS23: maturing glomerular tuft Absent GUDMAP:8957
TS23: glomerular capillary system of maturing glomerular tuft Absent GUDMAP:8957
TS23: glomerular basement membrane of maturing renal corpuscle Absent GUDMAP:8957
TS23: glomerular mesangium of maturing glomerular tuft Absent GUDMAP:8957
TS23: visceral epithelium of maturing renal corpuscle Absent GUDMAP:8957
TS23: Bowman's capsule of maturing renal corpuscle Absent GUDMAP:8957
TS23: parietal epithelium of maturing renal corpuscle Absent GUDMAP:8957
TS23: glomerular mesangium of maturing renal corpuscle Absent GUDMAP:8957
TS23: renal connecting tubule Absent GUDMAP:8957
TS23: cortical collecting duct Absent GUDMAP:8957
TS23: renal cortical interstitium Absent GUDMAP:8957
TS23: cortical early proximal tubule Absent GUDMAP:8957
TS23: renal cortical venous system Absent GUDMAP:8957
TS23: renal medullary interstitium Absent GUDMAP:8957
TS23: medullary collecting duct Absent GUDMAP:8957
TS23: renal pelvis Absent GUDMAP:8957
TS23: pelvic urothelial lining Absent GUDMAP:8957
TS23: pelvic smooth muscle Absent GUDMAP:8957
TS23: perihilar interstitium Absent GUDMAP:8957
TS23: collecting duct Absent GUDMAP:8957
TS23: renal interstitium Absent GUDMAP:8957
TS23: distal renal vesicle Present GUDMAP:8957
TS23: early distal tubule of capillary loop nephron Present GUDMAP:8957
Specimen GUDMAP:8958: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple. The low level expression control (Shh) probe did not detect expression. Thus, low levels of expression may not be detected in this experiment.
Structure Level Pattern Image Note
TS23: ureter Present Regionally restricted GUDMAP:8958 possible weak expression in the vasculature
TS23: ureteral vasculature Present GUDMAP:8958 possible weak expression
TS23: urothelium of ureter Absent GUDMAP:8958
TS23: superficial cell layer of ureter Absent GUDMAP:8958
TS23: intermediate cell layer of ureter Absent GUDMAP:8958
TS23: basal cell layer of ureter Absent GUDMAP:8958
TS23: ureteral mesenchyme Absent GUDMAP:8958
TS23: ureteral mesenchyme subepithelial layer Absent GUDMAP:8958
TS23: ureteral smooth muscle layer Absent GUDMAP:8958
TS23: ureteral smooth muscle layer smooth muscle component Absent GUDMAP:8958
TS23: ureteral smooth muscle layer interstitium Absent GUDMAP:8958
TS23: ureteral mesenchyme outer layer Absent GUDMAP:8958
Specimen GUDMAP:9044: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Present Regionally restricted GUDMAP:9044
TS17: mesonephros Present Regionally restricted GUDMAP:9044
TS17: mesonephric tubule Present Regionally restricted GUDMAP:9044 graded expression
TS17: mesonephros mesenchyme Absent GUDMAP:9044
TS17: metanephric mesenchyme Absent GUDMAP:9044
TS17: nephric duct, mesonephric portion Absent GUDMAP:9044
TS17: nephric duct, metanephric portion Absent GUDMAP:9044
TS17: developing vasculature of genitourinary system Absent GUDMAP:9044
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory