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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5541449
Gene symbol: Ptch1
Gene name: patched 1
Probe: UQPtc1plasmid
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:11406: embryonic day 15.5 (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using BM purple. The low level expression control (Shh) was detected; thefore, low levels of expression are likely to be detected in this experiment.
Structure Level Pattern Image Note
TS23: urinary system Present GUDMAP:11406
TS23: metanephros Present GUDMAP:11406
TS23: renal cortex Present GUDMAP:11406
TS23: renal cortical interstitium Present Regionally restricted GUDMAP:11406 Regional expression in cortical interstitium, adjacent to medullary interstitium and surrounding collecting ducts.
TS23: renal medulla Present GUDMAP:11406
TS23: renal medullary interstitium Present GUDMAP:11406
TS23: renal pelvis Present GUDMAP:11406
TS23: ureter Present GUDMAP:11406
TS23: nephrogenic zone Present GUDMAP:11406
TS23: cap mesenchyme Present GUDMAP:11406
TS23: nephrogenic interstitium Present GUDMAP:11406
TS23: renal capsule Absent GUDMAP:11406
TS23: ureteric tip Ambiguous GUDMAP:11406
TS23: ureteric tree terminal branch excluding tip itself Absent GUDMAP:11406
TS23: pretubular aggregate Absent GUDMAP:11406
TS23: renal vesicle Absent GUDMAP:11406
TS23: comma-shaped body Absent GUDMAP:11406
TS23: s-shaped body Absent GUDMAP:11406
TS23: capillary loop renal corpuscle Absent GUDMAP:11406
TS23: maturing renal corpuscle Absent GUDMAP:11406
TS23: cortical renal tubule Absent GUDMAP:11406
TS23: cortical collecting duct Ambiguous GUDMAP:11406
TS23: early tubule Absent GUDMAP:11406
TS23: developing capillary loop stage nephron group Absent GUDMAP:11406
TS23: maturing nephron Absent GUDMAP:11406
TS23: late tubule Absent GUDMAP:11406
TS23: immature loop of Henle Absent GUDMAP:11406
TS23: medullary collecting duct Ambiguous GUDMAP:11406
TS23: early nephron Absent GUDMAP:11406
TS23: collecting duct Ambiguous GUDMAP:11406
TS23: ureteric trunk Ambiguous GUDMAP:11406
TS23: renal interstitium Present GUDMAP:11406
TS23: pelvic smooth muscle Present GUDMAP:11406
TS23: ureteral mesenchyme Present GUDMAP:11406
TS23: urothelium of ureter Absent GUDMAP:11406
TS23: ureteral mesenchyme outer layer Absent GUDMAP:11406
TS23: ureteral smooth muscle layer Present GUDMAP:11406
TS23: pelvic urothelial lining Absent GUDMAP:11406
TS23: perihilar interstitium Absent GUDMAP:11406
Specimen GUDMAP:11407: embryonic day 15.5 (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using BM purple. The low level expression control (Shh) was detected; thefore, low levels of expression are likely to be detected in this experiment.
Structure Level Pattern Image Note
TS23: urinary system Present GUDMAP:11407
TS23: metanephros Present GUDMAP:11407
TS23: ureter Present GUDMAP:11407
TS23: ureteral mesenchyme Present GUDMAP:11407
TS23: urothelium of ureter Absent GUDMAP:11407
TS23: ureteral mesenchyme outer layer Absent GUDMAP:11407
TS23: ureteral smooth muscle layer Present GUDMAP:11407
Specimen GUDMAP:11408: postnatal day 4 (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using BM purple. The low level expression control (Shh) was detected; thefore, low levels of expression are likely to be detected in this experiment.
Structure Level Pattern Image Note
TS28: nephrogenic zone Present Regionally restricted GUDMAP:11408 Regional expression in nephrogenic zone in early nephrons. Expression uncertain in ureteric tips and adjacent terminal branches.
TS28: metanephros Present GUDMAP:11408
TS28: urinary system Present GUDMAP:11408
TS28: early nephron Present GUDMAP:11408
TS28: renal medulla Present GUDMAP:11408
TS28: renal cortex Present GUDMAP:11408
TS28: renal pelvis Present GUDMAP:11408
TS28: mature renal corpuscle Ambiguous GUDMAP:11408 Expression in subset of younger renal corpuscles closer to the periphery of the kidney.
TS28: renal cortical interstitium Present Regionally restricted GUDMAP:11408 radial expression
TS28: maturing nephron Ambiguous GUDMAP:11408
TS28: cortical renal tubule Present GUDMAP:11408
TS28: cortical collecting duct Ambiguous GUDMAP:11408
TS28: ureteric tip Ambiguous GUDMAP:11408
TS28: ureteric tree terminal branch excluding tip itself Ambiguous GUDMAP:11408
TS28: renal cortical vasculature Ambiguous GUDMAP:11408
TS28: mature nephron Ambiguous GUDMAP:11408
TS28: developing capillary loop stage nephron group Present GUDMAP:11408
TS28: collecting duct Ambiguous GUDMAP:11408
TS28: renal interstitium Present GUDMAP:11408
TS28: outer renal medulla Present GUDMAP:11408
TS28: outer medullary interstitium Present Regionally restricted GUDMAP:11408
TS28: loop of Henle of outer stripe of outer medulla Absent GUDMAP:11408
TS28: loop of Henle, outer medullary portion Absent GUDMAP:11408
TS28: loop of Henle, inner medullary portion Absent GUDMAP:11408
TS28: inner medullary collecting duct Absent GUDMAP:11408
TS28: outer medullary collecting duct Absent GUDMAP:11408
TS28: inner stripe of outer medulla Present GUDMAP:11408
TS28: inner renal medulla Present GUDMAP:11408
TS28: inner medullary interstitium Present GUDMAP:11408
TS28: pelvic smooth muscle Present GUDMAP:11408
TS28: outer stripe of outer medulla Present GUDMAP:11408
TS28: pelvic urothelial lining Absent GUDMAP:11408
TS28: perihilar interstitium Ambiguous GUDMAP:11408
TS28: ureter Present GUDMAP:11408
TS28: ureteral smooth muscle layer Present GUDMAP:11408
TS28: urothelium of ureter Absent GUDMAP:11408
TS28: renal cortical arterial system Ambiguous GUDMAP:11408 Possible weak expression in smooth muscle layer of large arteries.
TS28: renal cortical venous system Absent GUDMAP:11408
TS28: renal cortical capillary Absent GUDMAP:11408
TS28: ureteral vasculature Ambiguous GUDMAP:11408
TS28: adventitia of ureter Ambiguous GUDMAP:11408
TS28: proximal straight tubule, cortical portion Absent GUDMAP:11408
TS28: renal proximal convoluted tubule Absent GUDMAP:11408
TS28: distal convoluted tubule Absent GUDMAP:11408
TS28: distal straight tubule of renal cortex Absent GUDMAP:11408
TS28: cortical renal tubule of mature nephron group Absent GUDMAP:11408
Specimen GUDMAP:11409: postnatal day 4 (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using BM purple. The low level expression control (Shh) was detected; thefore, low levels of expression are likely to be detected in this experiment.
Structure Level Pattern Image Note
TS28: metanephros Present GUDMAP:11409
TS28: urinary system Present GUDMAP:11409
TS28: ureter Present GUDMAP:11409
TS28: ureteral smooth muscle layer Present GUDMAP:11409
TS28: ureteral vasculature Ambiguous GUDMAP:11409
TS28: urothelium of ureter Absent GUDMAP:11409
TS28: adventitia of ureter Ambiguous GUDMAP:11409
Specimen GUDMAP:11410: postnatal day 2 (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using BM purple. The low level expression control (Shh) was detected; thefore, low levels of expression are likely to be detected in this experiment.
Structure Level Pattern Image Note
TS27: urinary system Present GUDMAP:11410
TS27: metanephros Present GUDMAP:11410
TS27: nephrogenic zone Present GUDMAP:11410
TS27: ureteric tip Present GUDMAP:11410
TS27: cap mesenchyme Ambiguous GUDMAP:11410
TS27: early nephron Present GUDMAP:11410
TS27: renal cortex Present GUDMAP:11410
TS27: renal vesicle Present GUDMAP:11410
TS27: capillary loop renal corpuscle Present GUDMAP:11410
TS27: nephrogenic interstitium Absent GUDMAP:11410
TS27: comma-shaped body Present GUDMAP:11410
TS27: s-shaped body Present GUDMAP:11410
TS27: pretubular aggregate Ambiguous GUDMAP:11410
TS27: maturing renal corpuscle Present GUDMAP:11410
TS27: mature renal corpuscle Ambiguous GUDMAP:11410
TS27: cortical renal tubule Present Regionally restricted GUDMAP:11410
TS27: cortical collecting duct Absent GUDMAP:11410
TS27: mature nephron Ambiguous GUDMAP:11410
TS27: renal cortical interstitium Present Regionally restricted GUDMAP:11410 radial expression
TS27: renal medulla Present GUDMAP:11410
TS27: renal pelvis Present GUDMAP:11410
TS27: renal medullary interstitium Present GUDMAP:11410
TS27: outer renal medulla Present GUDMAP:11410
TS27: outer medullary interstitium Present GUDMAP:11410
TS27: inner renal medulla Present GUDMAP:11410
TS27: inner medullary interstitium Present GUDMAP:11410
TS27: pelvic smooth muscle Present GUDMAP:11410
TS27: loop of Henle Absent GUDMAP:11410
TS27: loop of Henle, inner medullary portion Absent GUDMAP:11410
TS27: loop of Henle, outer medullary portion Absent GUDMAP:11410
TS27: outer medullary collecting duct Absent GUDMAP:11410
TS27: inner medullary collecting duct Absent GUDMAP:11410
TS27: renal medullary vasculature Absent GUDMAP:11410
TS27: pelvic urothelial lining Absent GUDMAP:11410
TS27: perihilar interstitium Absent GUDMAP:11410
TS27: early tubule Present GUDMAP:11410
TS27: developing capillary loop stage nephron group Present GUDMAP:11410
TS27: maturing nephron Ambiguous GUDMAP:11410
TS27: renal interstitium Present GUDMAP:11410
TS27: ureter Present GUDMAP:11410
TS27: ureteral smooth muscle layer Present GUDMAP:11410
TS27: urothelium of ureter Absent GUDMAP:11410
TS27: adventitia of ureter Absent GUDMAP:11410
TS27: renal proximal convoluted tubule Absent GUDMAP:11410
TS27: distal convoluted tubule Absent GUDMAP:11410
TS27: distal straight tubule of renal cortex Absent GUDMAP:11410
TS27: cortical renal tubule of capillary loop nephron group Present GUDMAP:11410
TS27: cortical renal tubule of maturing nephron group Absent GUDMAP:11410
Specimen GUDMAP:11411: postnatal day 2 (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using BM purple. The low level expression control (Shh) was detected; thefore, low levels of expression are likely to be detected in this experiment.
Structure Level Pattern Image Note
TS27: urinary system Present GUDMAP:11411
TS27: metanephros Present GUDMAP:11411
TS27: ureter Present GUDMAP:11411
TS27: ureteral smooth muscle layer Present GUDMAP:11411
TS27: urothelium of ureter Absent GUDMAP:11411
TS27: adventitia of ureter Absent GUDMAP:11411
Specimen GUDMAP:11412: postnatal day 0 (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using BM purple. The low level expression control (Shh) was detected; thefore, low levels of expression are likely to be detected in this experiment.
Structure Level Pattern Image Note
TS27: metanephros Present GUDMAP:11412
TS27: nephrogenic zone Present GUDMAP:11412
TS27: cap mesenchyme Present GUDMAP:11412
TS27: pretubular aggregate Present GUDMAP:11412
TS27: ureteric tip Present GUDMAP:11412
TS27: ureteric tree terminal branch excluding tip itself Present GUDMAP:11412
TS27: renal cortex Present GUDMAP:11412
TS27: renal vesicle Present GUDMAP:11412
TS27: comma-shaped body Present GUDMAP:11412
TS27: s-shaped body Present GUDMAP:11412
TS27: capillary loop renal corpuscle Present GUDMAP:11412
TS27: maturing renal corpuscle Present GUDMAP:11412
TS27: renal cortical interstitium Present Regionally restricted GUDMAP:11412 radial expression
TS27: early tubule Present GUDMAP:11412
TS27: developing capillary loop stage nephron group Present GUDMAP:11412
TS27: maturing nephron Present GUDMAP:11412
TS27: renal medulla Present GUDMAP:11412
TS27: renal pelvis Present GUDMAP:11412
TS27: early nephron Present GUDMAP:11412
TS27: collecting duct Present GUDMAP:11412
TS27: nephrogenic interstitium Ambiguous GUDMAP:11412
TS27: cortical collecting duct Ambiguous GUDMAP:11412
TS27: cortical renal tubule Ambiguous GUDMAP:11412
TS27: renal cortical vasculature Absent GUDMAP:11412
TS27: loop of Henle, outer medullary portion Absent GUDMAP:11412
TS27: outer medullary collecting duct Absent GUDMAP:11412
TS27: loop of Henle, inner medullary portion Absent GUDMAP:11412
TS27: inner medullary collecting duct Absent GUDMAP:11412
TS27: renal medullary vasculature Absent GUDMAP:11412
TS27: loop of Henle Absent GUDMAP:11412
TS27: mature renal corpuscle Ambiguous GUDMAP:11412
TS27: renal medullary interstitium Present GUDMAP:11412
TS27: outer renal medulla Present GUDMAP:11412
TS27: outer medullary interstitium Present GUDMAP:11412
TS27: inner renal medulla Present GUDMAP:11412
TS27: inner medullary interstitium Present GUDMAP:11412
TS27: renal interstitium Present GUDMAP:11412
TS27: renal proximal convoluted tubule Absent GUDMAP:11412
TS27: distal convoluted tubule Absent GUDMAP:11412
TS27: distal straight tubule of renal cortex Absent GUDMAP:11412
TS27: ureter Present GUDMAP:11412
TS27: ureteral smooth muscle layer Present GUDMAP:11412
TS27: urothelium of ureter Absent GUDMAP:11412
TS27: adventitia of ureter Absent GUDMAP:11412
TS27: cortical renal tubule of maturing nephron group Absent GUDMAP:11412
TS27: cortical renal tubule of capillary loop nephron group Ambiguous GUDMAP:11412
Specimen GUDMAP:11413: postnatal day 0 (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using BM purple. The low level expression control (Shh) was detected; thefore, low levels of expression are likely to be detected in this experiment.
Structure Level Pattern Image Note
TS27: metanephros Present GUDMAP:11413
TS27: urinary system Present GUDMAP:11413
TS27: ureter Present GUDMAP:11413
TS27: ureteral smooth muscle layer Present GUDMAP:11413
TS27: ureteral smooth muscle layer smooth muscle component Present GUDMAP:11413
TS27: urothelium of ureter Absent GUDMAP:11413
TS27: adventitia of ureter Absent GUDMAP:11413
TS27: ureteral smooth muscle layer interstitium Ambiguous GUDMAP:11413
TS27: lamina propria of ureter Ambiguous GUDMAP:11413
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12/30/2025
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