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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5540732
Gene symbol: Synpo
Gene name: synaptopodin
Probe: RIKEN clone C630001F01 subclone
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:9714: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Present GUDMAP:9714
TS17: genitourinary system mesenchyme Present GUDMAP:9714
TS17: metanephric mesenchyme Absent GUDMAP:9714
TS17: nephric duct, metanephric portion Absent GUDMAP:9714
TS17: mesonephros Ambiguous GUDMAP:9714 possible weak expression in a structure in the mesonephros adjacent to mesonephric tubules
Specimen GUDMAP:9715: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: male reproductive system Present Regionally restricted GUDMAP:9715
TS21: mesonephros of male Present Regionally restricted GUDMAP:9715
TS21: mesonephric mesenchyme of male Present GUDMAP:9715
TS21: testis Present Regionally restricted GUDMAP:9715
TS21: interstitium of the testis Present GUDMAP:9715
TS21: paramesonephric duct of male, mesonephric portion Absent GUDMAP:9715
TS21: mesonephric tubule of male Absent GUDMAP:9715
TS21: nephric duct of male, mesonephric portion Ambiguous GUDMAP:9715 expression likely in the mesenchyme adjacent to the duct
TS21: developing vasculature of testis Ambiguous GUDMAP:9715 expression in the interstitium may include the vasculature
Specimen GUDMAP:9716: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: female reproductive system Present Regionally restricted GUDMAP:9716
TS21: mesonephros of female Present Regionally restricted GUDMAP:9716
TS21: mesonephric mesenchyme of female Present GUDMAP:9716
TS21: ovary Present GUDMAP:9716
TS21: mesenchymal stroma of ovary Present GUDMAP:9716
TS21: paramesonephric duct of female, mesonephric portion Absent GUDMAP:9716
TS21: nephric duct of female, rest of Absent GUDMAP:9716
TS21: mesonephric tubule of female Absent GUDMAP:9716
TS21: nephric duct of female, mesonephric portion Ambiguous GUDMAP:9716 expression in mesenchyme adjacent to nephric duct
Specimen GUDMAP:9717: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the female is shown. Annotators reported the male expression pattern in the metanephros is identical to female.
Structure Level Pattern Image Note
TS21: urinary system Present Regionally restricted GUDMAP:9717
TS21: renal artery Present GUDMAP:9717
TS21: metanephros Ambiguous GUDMAP:9717
TS21: ureter Ambiguous GUDMAP:9717 possible weak expression
Specimen GUDMAP:9718: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: ureter Ambiguous GUDMAP:9718 possible weak expression
Specimen GUDMAP:20574: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: metanephros Present GUDMAP:20574
TS23: renal cortex Present GUDMAP:20574
TS23: maturing renal corpuscle Present GUDMAP:20574
TS23: capillary loop renal corpuscle Present GUDMAP:20574
TS23: visceral epithelium of capillary loop renal corpuscle Present GUDMAP:20574
TS23: visceral epithelium of maturing renal corpuscle Present GUDMAP:20574
TS23: nephrogenic zone Absent GUDMAP:20574
TS23: cap mesenchyme Absent GUDMAP:20574
TS23: nephrogenic interstitium Absent GUDMAP:20574
TS23: ureteric tip Absent GUDMAP:20574
TS23: ureteric tree terminal branch excluding tip itself Absent GUDMAP:20574
TS23: renal vesicle Absent GUDMAP:20574
TS23: comma-shaped body Absent GUDMAP:20574
TS23: s-shaped body Absent GUDMAP:20574
TS23: parietal epithelium of capillary loop renal corpuscle Absent GUDMAP:20574
TS23: Bowman's capsule of maturing renal corpuscle Absent GUDMAP:20574
TS23: cortical renal tubule Absent GUDMAP:20574
TS23: cortical collecting duct Absent GUDMAP:20574
TS23: renal cortical interstitium Absent GUDMAP:20574
TS23: renal medulla Absent GUDMAP:20574
TS23: renal pelvis Absent GUDMAP:20574
TS23: immature loop of Henle Absent GUDMAP:20574
TS23: medullary collecting duct Absent GUDMAP:20574
TS23: renal medullary interstitium Absent GUDMAP:20574
TS23: pelvic urothelial lining Absent GUDMAP:20574
TS23: perihilar interstitium Absent GUDMAP:20574
TS23: pelvic smooth muscle Absent GUDMAP:20574
TS23: maturing glomerular tuft Present GUDMAP:20574
TS23: parietal epithelium of maturing renal corpuscle Absent GUDMAP:20574
TS23: pretubular aggregate Absent GUDMAP:20574
TS23: ureter Absent GUDMAP:20574
TS23: ureteral mesenchyme Absent GUDMAP:20574
TS23: urothelium of ureter Absent GUDMAP:20574
Specimen GUDMAP:20575: postnatal adult (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS28: metanephros Present GUDMAP:20575
TS28: renal cortex Present GUDMAP:20575
TS28: mature renal corpuscle Present GUDMAP:20575
TS28: glomerular tuft Present GUDMAP:20575
TS28: visceral epithelium of mature renal corpuscle Present GUDMAP:20575
TS28: Bowman's capsule of mature renal corpuscle Absent GUDMAP:20575
TS28: cortical renal tubule Absent GUDMAP:20575
TS28: cortical collecting duct Absent GUDMAP:20575
TS28: renal cortical interstitium Absent GUDMAP:20575
TS28: renal cortical vasculature Absent GUDMAP:20575
TS28: renal medulla Absent GUDMAP:20575
TS28: renal pelvis Absent GUDMAP:20575
TS28: outer renal medulla Absent GUDMAP:20575
TS28: inner renal medulla Absent GUDMAP:20575
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory